Non-Coding RNA Search

Ss1.1-rpro30_i8.5

Sequence:


               
               ATCTGTGTGTACGTGTGTGGGGGTGTGTGTAAGAATAAACTAATTATGTTCGCCTACAGT
AGACTTTGAGATTTATATGGACTAATTTTGTAATTGAGTGCTTGTGTGTCACATCCCAGT
CCACTGGCTGAACTTTGAAGATAAAAACGTGCAGCTGAATTAGGTATTTGAAAATTTAGC
CTTGACTGTATGTTGGCTGCAATTTTTAAAATACATTACTTTCATGACAGTTTCGCTTTC
CCTAGGGAAAACCCACAAAAAATTATTAACTGAGTGGTTCTTAATGGAAAACCTGGGTTG
CGGGATGCCTGTCCCCTTCATTTCCCCCATTCAGTTTCCTTATTTTCCTATGAGTCAATG
GAAACCTTTATAAGGGATCTTTGTTGCTTTAGAGTTTATCTACTGCTGTTCCTCCCTGGA
GTTAGTCTTGTGCCCGTGATCATGGAAAGAACCTGTGATTCCAGGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTGTGTGTACGTGTGTGGGGGTGTGTGTAAGAATAAACTAATTATGTTCGCCTACAGT
AGACTTTGAGATTTATATGGACTAATTTTGTAATTGAGTGCTTGTGTGTCACATCCCAGT
CCACTGGCTGAACTTTGAAGATAAAAACGTGCAGCTGAATTAGGTATTTGAAAATTTAGC
CTTGACTGTATGTTGGCTGCAATTTTTAAAATACATTACTTTCATGACAGTTTCGCTTTC
CCTAGGGAAAACCCACAAAAAATTATTAACTGAGTGGTTCTTAATGGAAAACCTGGGTTG
CGGGATGCCTGTCCCCTTCATTTCCCCCATTCAGTTTCCTTATTTTCCTATGAGTCAATG
GAAACCTTTATAAGGGATCTTTGTTGCTTTAGAGTTTATCTACTGCTGTTCCTCCCTGGA
GTTAGTCTTGTGCCCGTGATCATGGAAAGAACCTGTGATTCCAGGTGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               211-404, + strand, RNAz p=0.988185

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               211-404, + strand, RNAz p=0.988185

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               233-307, + strand, RNAmicro p=0.928991

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               233-307, + strand, RNAmicro p=0.928991

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               13-468, gnl|bosTau2|chr19 (42785603-42785146)
               

               
               13-468, gnl|Hg17|chr17 (60087289-60086842)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-468, gnl|bosTau2|chr19 (42785603-42785146)
               

               
               13-468, gnl|Hg17|chr17 (60087289-60086842)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pro (0.512033)
               

               
               liv (0.146284)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               liv (0.146284)

	13-468, gnl\|bosTau2\|chr19 (42785603-42785146)
	13-468, gnl\|Hg17\|chr17 (60087289-60086842)