Ss1.1-rpro32_j13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGGGTAGCGACTCAGAAATCATGTGACTGATGACTAAGTTAAATCTTTTCTGCTTATTA AAAGGGAAGAGTCTGATGATTAGTTACTGATTCTCCTTACATTTTTAACATTTTGGAGAT ATTGAAGCATGTTTCCATTTATGCTGTTTTCCACCTTGTTTTCTTCCATATTTACTGAAC CTAGGGAGAAAATGTGGATCTGCAATTCCTCTGATGCAAGTCTTTGGTACAACTACTGTG ATGACATGAAATTCCCTATTTCAGTAAAGGTTGAGCCCTGTGTAACAATAAAGGGAACCA AGGGGAAATTGCATCTTTACTACATTGCACGAAGAGACATACAAAAATTATATCTCAACC TCCATATATCTATTAAGTCCATGACTTTACCAATGCGCAAAGAAGTTATTTGCCGAGAAT ATGGTGGTGATTATTCTTTTTGCGGAGCTCTGAAGGGAGAGACTGTGAATACAACAATAC CATTCTCCTTCCAGGGAATACGATTTTCTCCGGGACAATACCATTGTGTTGTAGAAGCCA TCTCTGGGAATAGTGAAGAAATGCTGTTTTGCCTGAACTTCACCATCATACATTACTCCA GTTTAAATTAGAATAAATCAAGTATGTGCTTTTATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGGGTAGCGACTCAGAAATCATGTGACTGATGACTAAGTTAAATCTTTTCTGCTTATTA AAAGGGAAGAGTCTGATGATTAGTTACTGATTCTCCTTACATTTTTAACATTTTGGAGAT ATTGAAGCATGTTTCCATTTATGCTGTTTTCCACCTTGTTTTCTTCCATATTTACTGAAC CTAGGGAGAAAATGTGGATCTGCAATTCCTCTGATGCAAGTCTTTGGTACAACTACTGTG ATGACATGAAATTCCCTATTTCAGTAAAGGTTGAGCCCTGTGTAACAATAAAGGGAACCA AGGGGAAATTGCATCTTTACTACATTGCACGAAGAGACATACAAAAATTATATCTCAACC TCCATATATCTATTAAGTCCATGACTTTACCAATGCGCAAAGAAGTTATTTGCCGAGAAT ATGGTGGTGATTATTCTTTTTGCGGAGCTCTGAAGGGAGAGACTGTGAATACAACAATAC CATTCTCCTTCCAGGGAATACGATTTTCTCCGGGACAATACCATTGTGTTGTAGAAGCCA TCTCTGGGAATAGTGAAGAAATGCTGTTTTGCCTGAACTTCACCATCATACATTACTCCA GTTTAAATTAGAATAAATCAAGTATGTGCTTTTATT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 3-240, gnl|bosTau2|chr14 (20720198-20719956) | |
| 3-240, gnl|canFam2|chr29 (25492999-25493262) | |
| 3-240, gnl|dasNov1|scaffold_82112 (2434-2154) | |
| 3-240, gnl|echTel1|scaffold_64942 (1430-1135) | |
| 3-240, gnl|hg17|chr8 (75066021-75066309) | |
| 3-240, gnl|Hg17|chr8 (75066106-75066343) | |
| 3-240, gnl|loxAfr1|scaffold_35083 (30574-30866) | |
| 3-240, gnl|mm7|chr1 (16877527-16877814) | |
| 3-240, gnl|Mm7|chr1 (16877628-16877848) | |
| 3-240, gnl|monDom2|scaffold_4 (86480699-86480399) | |
| 3-240, gnl|oryCun1|scaffold_97154 (16621-16358) | |
| 3-240, gnl|panTro1|chr7 (77105618-77105906) | |
| 3-240, gnl|rheMac2|chr8 (76483158-76483448) | |
| 300-459, gnl|bosTau2|chr14 (20698734-20698576) | |
| 300-459, gnl|canFam2|chr29 (25504262-25504515) | |
| 300-459, gnl|echTel1|scaffold_280044 (1214-1450) | |
| 300-459, gnl|hg17|chr8 (75084698-75084952) | |
| 300-459, gnl|Hg17|chr8 (75084761-75084918) | |
| 300-459, gnl|loxAfr1|scaffold_72884 (5520-5237) | |
| 300-459, gnl|mm7|chr1 (16889935-16890186) | |
| 300-459, gnl|Mm7|chr1 (16889991-16890152) | |
| 300-459, gnl|oryCun1|scaffold_97154 (1133-883) | |
| 300-459, gnl|panTro1|chr7 (77124323-77124577) | |
| 300-459, gnl|rheMac2|chr8 (76502410-76502664) | |
| 512-636, gnl|bosTau2|chr14 (20687313-20687189) | |
| 512-636, gnl|canFam2|chr29 (25514251-25514421) | |
| 512-636, gnl|dasNov1|scaffold_50458 (6375-6201) | |
| 512-636, gnl|echTel1|scaffold_280044 (9384-9537) | |
| 512-636, gnl|hg17|chr8 (75103686-75103860) | |
| 512-636, gnl|Hg17|chr8 (75103744-75103859) | |
| 512-636, gnl|loxAfr1|scaffold_47424 (5716-5534) | |
| 512-636, gnl|mm7|chr1 (16898609-16898780) | |
| 512-636, gnl|Mm7|chr1 (16898667-16898770) | |
| 512-636, gnl|oryCun1|scaffold_158622 (7688-7862) | |
| 512-636, gnl|panTro1|chr7 (77143380-77143554) | |
| 512-636, gnl|rheMac2|chr8 (76521108-76521282) | |
| 512-636, gnl|rn3|chr5 (1702114-1701955) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-240, gnl|bosTau2|chr14 (20720198-20719956) | |
| 3-240, gnl|canFam2|chr29 (25492999-25493262) | |
| 3-240, gnl|dasNov1|scaffold_82112 (2434-2154) | |
| 3-240, gnl|echTel1|scaffold_64942 (1430-1135) | |
| 3-240, gnl|hg17|chr8 (75066021-75066309) | |
| 3-240, gnl|Hg17|chr8 (75066106-75066343) | |
| 3-240, gnl|loxAfr1|scaffold_35083 (30574-30866) | |
| 3-240, gnl|mm7|chr1 (16877527-16877814) | |
| 3-240, gnl|Mm7|chr1 (16877628-16877848) | |
| 3-240, gnl|monDom2|scaffold_4 (86480699-86480399) | |
| 3-240, gnl|oryCun1|scaffold_97154 (16621-16358) | |
| 3-240, gnl|panTro1|chr7 (77105618-77105906) | |
| 3-240, gnl|rheMac2|chr8 (76483158-76483448) | |
| 300-459, gnl|bosTau2|chr14 (20698734-20698576) | |
| 300-459, gnl|canFam2|chr29 (25504262-25504515) | |
| 300-459, gnl|echTel1|scaffold_280044 (1214-1450) | |
| 300-459, gnl|hg17|chr8 (75084698-75084952) | |
| 300-459, gnl|Hg17|chr8 (75084761-75084918) | |
| 300-459, gnl|loxAfr1|scaffold_72884 (5520-5237) | |
| 300-459, gnl|mm7|chr1 (16889935-16890186) | |
| 300-459, gnl|Mm7|chr1 (16889991-16890152) | |
| 300-459, gnl|oryCun1|scaffold_97154 (1133-883) | |
| 300-459, gnl|panTro1|chr7 (77124323-77124577) | |
| 300-459, gnl|rheMac2|chr8 (76502410-76502664) | |
| 512-636, gnl|bosTau2|chr14 (20687313-20687189) | |
| 512-636, gnl|canFam2|chr29 (25514251-25514421) | |
| 512-636, gnl|dasNov1|scaffold_50458 (6375-6201) | |
| 512-636, gnl|echTel1|scaffold_280044 (9384-9537) | |
| 512-636, gnl|hg17|chr8 (75103686-75103860) | |
| 512-636, gnl|Hg17|chr8 (75103744-75103859) | |
| 512-636, gnl|loxAfr1|scaffold_47424 (5716-5534) | |
| 512-636, gnl|mm7|chr1 (16898609-16898780) | |
| 512-636, gnl|Mm7|chr1 (16898667-16898770) | |
| 512-636, gnl|oryCun1|scaffold_158622 (7688-7862) | |
| 512-636, gnl|panTro1|chr7 (77143380-77143554) | |
| 512-636, gnl|rheMac2|chr8 (76521108-76521282) | |
| 512-636, gnl|rn3|chr5 (1702114-1701955) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| mga (0.801025) | |
| rec (0.519211) | |
| pro (0.512033) | |
| sug (0.509165) | |
| fat (0.294855) | |
| lin (0.291206) | |
| ova (0.258264) | |
| pgl (0.236967) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| gul (0.177588) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| lyg (0.133103) | |
| thg (0.126791) | |
| tra (0.123092) | |
| eru (0.120048) | |
| jej (0.0989218) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mga (0.801025) | |
| rec (0.519211) | |
| pro (0.512033) | |
| sug (0.509165) | |
| fat (0.294855) | |
| lin (0.291206) | |
| ova (0.258264) | |
| pgl (0.236967) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| gul (0.177588) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| lyg (0.133103) | |
| thg (0.126791) | |
| tra (0.123092) | |
| eru (0.120048) | |
| jej (0.0989218) |