Non-Coding RNA Search

Ss1.1-rpro32_m11.5

Sequence:


               
               TGTGCTGGGAGTTGGTGGTGCGGTGCGGGTTCTTGGGAACGAACGTCTTGGGCGCGGACT
GGTATCCGGGGACTGTGACTTGCAGGGTCCGTCATGGAGCCAGAGCAGATGCTGGAGGGA
CAGACGCAGGTTGCAGAAAATCCCCATTCTGAGTACGGTCTCACGGACAATGTCGAGAGG
ATAGTAGAAAATGAGAAAATTAATGCAGAAAAGTCATCAAAACAGAAAGTGGACCTCCAG
TCTTTGCCAACTCGTGCCTATCTGGATCAGACAGTTGTGCCTATCTTATTACAAGGACTT
GCTGTGCTTGCAAAGGAAAGACCACCAAATCCCATTGAATTTCTAGCATCATATCTTTTA
AAAAACAAGGCACAGTTTGAAGATCGAAACTGACTCATTGGGAAGAACAGAACAATTTGG
TTTCTACTGTAGATTTACAAGATTAAGAGGCAGCTTTAATTGCCATGATTGCCCCCTCCC
TTGGAAGTATAAGAACCTTCATGACAGCAGAACTTATTTCCAGAATTACAGAGAAAAACA
TACGTCCCTTATTGATTTAATCACATACTATTTAATGAGTGTATTCGGTGCAATTTTTCT
CAGATTGTCTTTATCTTTGTTTTTAAAATGACCCTCAAAATAAACTGTTAAAACATTAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGCTGGGAGTTGGTGGTGCGGTGCGGGTTCTTGGGAACGAACGTCTTGGGCGCGGACT
GGTATCCGGGGACTGTGACTTGCAGGGTCCGTCATGGAGCCAGAGCAGATGCTGGAGGGA
CAGACGCAGGTTGCAGAAAATCCCCATTCTGAGTACGGTCTCACGGACAATGTCGAGAGG
ATAGTAGAAAATGAGAAAATTAATGCAGAAAAGTCATCAAAACAGAAAGTGGACCTCCAG
TCTTTGCCAACTCGTGCCTATCTGGATCAGACAGTTGTGCCTATCTTATTACAAGGACTT
GCTGTGCTTGCAAAGGAAAGACCACCAAATCCCATTGAATTTCTAGCATCATATCTTTTA
AAAAACAAGGCACAGTTTGAAGATCGAAACTGACTCATTGGGAAGAACAGAACAATTTGG
TTTCTACTGTAGATTTACAAGATTAAGAGGCAGCTTTAATTGCCATGATTGCCCCCTCCC
TTGGAAGTATAAGAACCTTCATGACAGCAGAACTTATTTCCAGAATTACAGAGAAAAACA
TACGTCCCTTATTGATTTAATCACATACTATTTAATGAGTGTATTCGGTGCAATTTTTCT
CAGATTGTCTTTATCTTTGTTTTTAAAATGACCCTCAAAATAAACTGTTAAAACATTAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|16359014|gb|AAH15970.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16359014|gb|AAH15970.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               319-656, gnl|bosTau2|chr11 (12140769-12140426)
               

               
               319-656, gnl|Hg17|chr2 (32160978-32160627)
               

               
               319-656, gnl|Mm7|chr17 (72588078-72587737)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               319-656, gnl|bosTau2|chr11 (12140769-12140426)
               

               
               319-656, gnl|Hg17|chr2 (32160978-32160627)
               

               
               319-656, gnl|Mm7|chr17 (72588078-72587737)

Expressed library(ies): 53 entry(ies)

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Expressed library(ies): 53 entry(ies)

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               sin (0.874738)
               

               
               cki (0.826173)
               

               
               ova (0.774793)
               

               
               che (0.68157)
               

               
               ldo (0.679018)
               

               
               ste (0.676041)
               

               
               sme (0.610874)
               

               
               bfe (0.599431)
               

               
               aor (0.585823)
               

               
               spc (0.566829)
               

               
               cst (0.560146)
               

               
               cmu (0.55918)
               

               
               fce (0.543183)
               

               
               ssp (0.542079)
               

               
               lyg (0.532411)
               

               
               duo (0.518403)
               

               
               pro (0.512033)
               

               
               sug (0.509165)
               

               
               cje (0.495704)
               

               
               fco (0.471624)
               

               
               fat (0.442282)
               

               
               hlv (0.417769)
               

               
               kid (0.389206)
               

               
               bla (0.373042)
               

               
               gul (0.355177)
               

               
               lun (0.300978)
               

               
               ski (0.29347)
               

               
               lin (0.291206)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               pan (0.23596)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

Expressed library(ies): 53 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.874738)
               

               
               cki (0.826173)
               

               
               ova (0.774793)
               

               
               che (0.68157)
               

               
               ldo (0.679018)
               

               
               ste (0.676041)
               

               
               sme (0.610874)
               

               
               bfe (0.599431)
               

               
               aor (0.585823)
               

               
               spc (0.566829)
               

               
               cst (0.560146)
               

               
               cmu (0.55918)
               

               
               fce (0.543183)
               

               
               ssp (0.542079)
               

               
               lyg (0.532411)
               

               
               duo (0.518403)
               

               
               pro (0.512033)
               

               
               sug (0.509165)
               

               
               cje (0.495704)
               

               
               fco (0.471624)
               

               
               fat (0.442282)
               

               
               hlv (0.417769)
               

               
               kid (0.389206)
               

               
               bla (0.373042)
               

               
               gul (0.355177)
               

               
               lun (0.300978)
               

               
               ski (0.29347)
               

               
               lin (0.291206)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               pan (0.23596)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

	319-656, gnl\|bosTau2\|chr11 (12140769-12140426)
	319-656, gnl\|Hg17\|chr2 (32160978-32160627)
	319-656, gnl\|Mm7\|chr17 (72588078-72587737)

	sin (0.874738)
	cki (0.826173)
	ova (0.774793)
	che (0.68157)
	ldo (0.679018)
	ste (0.676041)
	sme (0.610874)
	bfe (0.599431)
	aor (0.585823)
	spc (0.566829)
	cst (0.560146)
	cmu (0.55918)
	fce (0.543183)
	ssp (0.542079)
	lyg (0.532411)
	duo (0.518403)
	pro (0.512033)
	sug (0.509165)
	cje (0.495704)
	fco (0.471624)
	fat (0.442282)
	hlv (0.417769)
	kid (0.389206)
	bla (0.373042)
	gul (0.355177)
	lun (0.300978)
	ski (0.29347)
	lin (0.291206)
	thg (0.253582)
	tra (0.246184)
	cbe (0.239234)
	pan (0.23596)
	tes (0.207814)
	hea (0.204499)
	eje (0.197668)
	col (0.195008)
	sag (0.182715)
	sto (0.179824)
	fty (0.17584)
	ill (0.175593)
	ton (0.1755)
	fbs (0.175346)
	eye (0.170503)
	cut (0.169924)
	nco (0.161734)
	csp (0.161186)
	mga (0.160205)
	isp (0.150376)
	csk (0.140746)
	nmm (0.132802)
	pgl (0.118483)
	med (0.116252)
	jej (0.0989218)