Non-Coding RNA Search

Ss1.1-rpro33_e20.5

Sequence:


               
               TTCCTGAAGGGAACAAGGGCCAGGCAGATTCCCCGCACATCCCAGCCCCCTCCTGCCCCC
TGATGCCCAGGGCCGGGCCATATTCTTCCCGTTCACTCACTTAGAATCTCCTGGCCCAGA
AACCATTTATCTCTGGGCCTAAATCAATTGCCACAACCCCCAAAGTGAGTAAAAAGAAGA
GGAGAGAGCAGTTAAAAATGCAGGGCTGTGGAGGGGGGGGGATGGGGGGTGGGGGGTGCT
CTGGAGCCGAGGGACACGTGCATCCACATTTCCTCTGCATACGTCACCCCCTACTAGAAT
CTTAAGCCATTACTCTAGACTCTTCTAGAGCCCAGTGGAGTGTTAGTGCGTCCCCAGTTC
TATTCACTCACGTGCTTCCTCTGAATAGCGAATGTGACAGTTTGAAGAGCTGGTAGAATT
AATCCCTCTTACTGTAGATAGCGCTGTGAATCTTGGGTTTCGTTTTTTGTTTTTTGTTTT
TTTTTTCTGTGTTCTTTCAGATGAGATATCTATAAATATCTATACATTATATATATATAT
ATACATATGTATATTGAGTCCTCCTGCCTGTGGTTTTCCATCGGAAGTTGTCTCTTCTTT
GGTCAAAGTGAAATTTTAATGGAATTTATTATTTTCCTCTCTGTACAAAGCCTACTTTTG
TGTTTTCTGGTGGCTTGATGTCATGAGACTTTGAGATGACAAAATGTAAAACAAAAACCC
TTGTCAACATAGAAAGAGTTAACTGTGCTGAAAACCTAATAAAGAAACTAAGAAGAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCTGAAGGGAACAAGGGCCAGGCAGATTCCCCGCACATCCCAGCCCCCTCCTGCCCCC
TGATGCCCAGGGCCGGGCCATATTCTTCCCGTTCACTCACTTAGAATCTCCTGGCCCAGA
AACCATTTATCTCTGGGCCTAAATCAATTGCCACAACCCCCAAAGTGAGTAAAAAGAAGA
GGAGAGAGCAGTTAAAAATGCAGGGCTGTGGAGGGGGGGGGATGGGGGGTGGGGGGTGCT
CTGGAGCCGAGGGACACGTGCATCCACATTTCCTCTGCATACGTCACCCCCTACTAGAAT
CTTAAGCCATTACTCTAGACTCTTCTAGAGCCCAGTGGAGTGTTAGTGCGTCCCCAGTTC
TATTCACTCACGTGCTTCCTCTGAATAGCGAATGTGACAGTTTGAAGAGCTGGTAGAATT
AATCCCTCTTACTGTAGATAGCGCTGTGAATCTTGGGTTTCGTTTTTTGTTTTTTGTTTT
TTTTTTCTGTGTTCTTTCAGATGAGATATCTATAAATATCTATACATTATATATATATAT
ATACATATGTATATTGAGTCCTCCTGCCTGTGGTTTTCCATCGGAAGTTGTCTCTTCTTT
GGTCAAAGTGAAATTTTAATGGAATTTATTATTTTCCTCTCTGTACAAAGCCTACTTTTG
TGTTTTCTGGTGGCTTGATGTCATGAGACTTTGAGATGACAAAATGTAAAACAAAAACCC
TTGTCAACATAGAAAGAGTTAACTGTGCTGAAAACCTAATAAAGAAACTAAGAAGAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               555-781, gnl|bosTau2|chr15 (27506936-27506703)
               

               
               555-781, gnl|Hg17|chr16 (57104529-57104819)
               

               
               555-781, gnl|Mm7|chr8 (94303691-94303901)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               555-781, gnl|bosTau2|chr15 (27506936-27506703)
               

               
               555-781, gnl|Hg17|chr16 (57104529-57104819)
               

               
               555-781, gnl|Mm7|chr8 (94303691-94303901)

Expressed library(ies): 31 entry(ies)

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Expressed library(ies): 31 entry(ies)

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               spc (2.60741)
               

               
               pro (2.04813)
               

               
               fco (1.41487)
               

               
               hea (1.22699)
               

               
               fce (1.08637)
               

               
               cbe (0.956938)
               

               
               hyp (0.714184)
               

               
               fhi (0.678311)
               

               
               gul (0.532765)
               

               
               rec (0.519211)
               

               
               lyg (0.399308)
               

               
               fcc (0.39557)
               

               
               aor (0.390549)
               

               
               fbs (0.350693)
               

               
               cut (0.339847)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               sug (0.127291)
               

               
               nbm (0.0993246)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (2.60741)
               

               
               pro (2.04813)
               

               
               fco (1.41487)
               

               
               hea (1.22699)
               

               
               fce (1.08637)
               

               
               cbe (0.956938)
               

               
               hyp (0.714184)
               

               
               fhi (0.678311)
               

               
               gul (0.532765)
               

               
               rec (0.519211)
               

               
               lyg (0.399308)
               

               
               fcc (0.39557)
               

               
               aor (0.390549)
               

               
               fbs (0.350693)
               

               
               cut (0.339847)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               sug (0.127291)
               

               
               nbm (0.0993246)

	555-781, gnl\|bosTau2\|chr15 (27506936-27506703)
	555-781, gnl\|Hg17\|chr16 (57104529-57104819)
	555-781, gnl\|Mm7\|chr8 (94303691-94303901)

	spc (2.60741)
	pro (2.04813)
	fco (1.41487)
	hea (1.22699)
	fce (1.08637)
	cbe (0.956938)
	hyp (0.714184)
	fhi (0.678311)
	gul (0.532765)
	rec (0.519211)
	lyg (0.399308)
	fcc (0.39557)
	aor (0.390549)
	fbs (0.350693)
	cut (0.339847)
	thg (0.253582)
	bla (0.248694)
	pgl (0.236967)
	ebs (0.236602)
	ecc (0.23007)
	tes (0.207814)
	fty (0.17584)
	bfe (0.149858)
	spl (0.143184)
	pty (0.142714)
	hlv (0.139256)
	kid (0.129735)
	ret (0.128733)
	cbr (0.127975)
	sug (0.127291)
	nbm (0.0993246)