Ss1.1-rpro33_h8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCAGCGGGTTGTGTTACGTTGCTCGCTGAGGTTCGCCGGGTCATGGTGCCATCCTGACTG GGAAGAGGACGCTCCCGGGAAACGAATGAGGAACCACCTCCTACTACTGTTCAAGTACAG GGGCCTGGTCCGCAAAGGGAAGAAAAGCAAAAGACGAAAATGGCTAAATTCGTTATCCGC CCGGCCACTGCTGCCGACTGCAGTGATATCCTGCGGCTGATCAAGGAATTGGCTAAATAC GAATACATGGAAGAACAAGTAATATTAACTGAAAAAGATCTGCTAGAAGATGGTTTCGGA GAGCACCCCTTCTACCACTGCCTGGTTGCAGAAGTGCCCAAGGAGCATCTAACTCCGGAA GGTAATCGCCCTCCCCTTCCAGAAGCCGGAGAGACCGAGTGTTGTGTAAGACGTAGTGTC TGCTCTGTAGAAGCACTGACAACACGGGCTGAAGTTAAGCTACTAAGAAGTTGGCCAGAA ATAATAGCCAGCCAGTGTTCAAACTACTGAGGAAAAAAAATAGGTGTGCTGCACTTAATA ATAGGGCGGGTTAAAAGAGCTGTTTAAGTTCAGTGCTGTGGAGCCCCGAAGAGTTTGAGC CGATTAAGTAAGTATCAGAGTGCTGTGGAAACCCGGAAAAGTTAGGTATAAAGTCATTTG TTGTAATTCAGTTTCATAAATGGTTCTTGTTTGACCCTAACGTAACCTTTTTTGTATTTG TGTTAAATTACATTTTTTTCTTTAATTTGTCCCAATCTTCAGGTTACAGTCTCTAGCTTC GCCATGTACATGGCCCTTCCGTGTACATGGATGGGCGGGGAGGTAACTAAAAGATCCTTT ACACAATAAAGTAGATGATCATGATAAATGAGGTAAGGCCCTGTTATCACACACTTAAAA CACGGTAGATCAGAAGCTCCATTGTACTCGCTTCCTGTTTGCAAAGGACTATAGAATGGC TAGAAAGTTTAATTTGAAACCTTTGTCTCCAATTGGAATTACAGACACCCATTAAGAGGG AGTCAGATGCTTTTTTTTTTGCCTTTTTTTTTTTTTCCTTGCTGGTCGTGGTTGACTGGT CAGAAGACAGAGCTAAAGGGGGAAGTTGTTTTGGGGGGAGGTGATTAAGTTTTTCCCTGA GGCCATTTCCTCATGCTAGAAAAAAAACCGTGCAGAAAACATAAAGGGATGAGGTACTTT CCAGAAGTATGTGGATGTTACATCATACCTGGGTACCTCTGCTTCTTCCGGCTTAACAAC TGGAGAGAGCAAATTGAAGATGTGTGAATTGGAAGGCAAGTTCTGAAATTAAACATTGCA CTTTTGGCCCGATGTCCGGACATTAAGGAAGCAGAGTTTCTAAACTACAAATACTATTCT GAACTGCCGTGTAAACCTGACTTATTCCCAAGTCACCATACCAGTATATAAATAGGATGT GAATAATGTGTGTTGTGTTACGTTGCTCGCTGAGGTTCGCCGGGTCATGGTGCCATCCTG ACTGGGAAGAGGACGCTCCCGGGAAACGAATGAGGAACCACCTCCTACTACTGTTCAAGT ACAGGGGCCTGGTCCGCAAAGGGAAGAAAAGCAAAAGACGAAAATGGCTAAATTCGTTAT CCGCCCGGCCACTGCTGCCGACTGCAGTGATATCCTGCGGCTGATCAAGGAATTGGCTAA ATACGAATACATGGAAGAACAAGTAATATTAACTGAAAAAGATCTGCTAGAAGATGGTTT CGGAGAGCACCCCTTCTACCACTGCCTGGTTGCAGAAGTGCCCAAGGAGCATCTAACTCC GGAAGGACACAGCATTGTTGGTTTTGCCATGTACTATTTTACTTATGACCCATGGATTGG CAAACTGTTGTATCTTGAGGACTTCTTCGTGATGAGTGATTATAGAGGCTTTGGCATAGG ATCAGAAATCCTGAAGAATCTAAGCCAGGTTGCAATGAAATGTCGCTGCAGCAGCATGCA CTTCTTGGTAGCTGAGTGGAATGAACCATCTATCAACTTCTACAAAAGAAGAGGTGCTTC TGATCTGTCCAGCGAAGAGGGATGGAGACTCTTCAAGATCGACAAGGAGTACTTGCTAAA AATGGCAGCAGAGGAATGAGGAGTGCTGGTGTAGATTGACAATGACAGCTTCCATTCTAT TTTAGAACAAATTCTCAACTTATCTTGCTTTCTATCCTATTCGTAGTGGAATAATAGAAT GAGCACCTATTCCAAAGCTTTATTACCAGTGGCGTTGTTGCATGTTTGAAATAAGGTCTC TTTACGATGACAGTCTTGTATGCCAATTGGAGTCAGGTTTCTCTCGAACATCTTTTGATA AACAACAAGGTGGTATGATAATGTCTATGAAAAAAACTTCATTCTTGTGAGTCATTTAAA TGTGTACAATGTACACACTGGTATTTAGAGTTTCTGTTTTGATTCTTTTTTAATAAACTG CCCTTTGATTTAAAAAAAAAAAAAAAAAAAAAAAAATTAATAATCCTTTATTTCTTACGA CAGTTTTCTTAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCAGCGGGTTGTGTTACGTTGCTCGCTGAGGTTCGCCGGGTCATGGTGCCATCCTGACTG GGAAGAGGACGCTCCCGGGAAACGAATGAGGAACCACCTCCTACTACTGTTCAAGTACAG GGGCCTGGTCCGCAAAGGGAAGAAAAGCAAAAGACGAAAATGGCTAAATTCGTTATCCGC CCGGCCACTGCTGCCGACTGCAGTGATATCCTGCGGCTGATCAAGGAATTGGCTAAATAC GAATACATGGAAGAACAAGTAATATTAACTGAAAAAGATCTGCTAGAAGATGGTTTCGGA GAGCACCCCTTCTACCACTGCCTGGTTGCAGAAGTGCCCAAGGAGCATCTAACTCCGGAA GGTAATCGCCCTCCCCTTCCAGAAGCCGGAGAGACCGAGTGTTGTGTAAGACGTAGTGTC TGCTCTGTAGAAGCACTGACAACACGGGCTGAAGTTAAGCTACTAAGAAGTTGGCCAGAA ATAATAGCCAGCCAGTGTTCAAACTACTGAGGAAAAAAAATAGGTGTGCTGCACTTAATA ATAGGGCGGGTTAAAAGAGCTGTTTAAGTTCAGTGCTGTGGAGCCCCGAAGAGTTTGAGC CGATTAAGTAAGTATCAGAGTGCTGTGGAAACCCGGAAAAGTTAGGTATAAAGTCATTTG TTGTAATTCAGTTTCATAAATGGTTCTTGTTTGACCCTAACGTAACCTTTTTTGTATTTG TGTTAAATTACATTTTTTTCTTTAATTTGTCCCAATCTTCAGGTTACAGTCTCTAGCTTC GCCATGTACATGGCCCTTCCGTGTACATGGATGGGCGGGGAGGTAACTAAAAGATCCTTT ACACAATAAAGTAGATGATCATGATAAATGAGGTAAGGCCCTGTTATCACACACTTAAAA CACGGTAGATCAGAAGCTCCATTGTACTCGCTTCCTGTTTGCAAAGGACTATAGAATGGC TAGAAAGTTTAATTTGAAACCTTTGTCTCCAATTGGAATTACAGACACCCATTAAGAGGG AGTCAGATGCTTTTTTTTTTGCCTTTTTTTTTTTTTCCTTGCTGGTCGTGGTTGACTGGT CAGAAGACAGAGCTAAAGGGGGAAGTTGTTTTGGGGGGAGGTGATTAAGTTTTTCCCTGA GGCCATTTCCTCATGCTAGAAAAAAAACCGTGCAGAAAACATAAAGGGATGAGGTACTTT CCAGAAGTATGTGGATGTTACATCATACCTGGGTACCTCTGCTTCTTCCGGCTTAACAAC TGGAGAGAGCAAATTGAAGATGTGTGAATTGGAAGGCAAGTTCTGAAATTAAACATTGCA CTTTTGGCCCGATGTCCGGACATTAAGGAAGCAGAGTTTCTAAACTACAAATACTATTCT GAACTGCCGTGTAAACCTGACTTATTCCCAAGTCACCATACCAGTATATAAATAGGATGT GAATAATGTGTGTTGTGTTACGTTGCTCGCTGAGGTTCGCCGGGTCATGGTGCCATCCTG ACTGGGAAGAGGACGCTCCCGGGAAACGAATGAGGAACCACCTCCTACTACTGTTCAAGT ACAGGGGCCTGGTCCGCAAAGGGAAGAAAAGCAAAAGACGAAAATGGCTAAATTCGTTAT CCGCCCGGCCACTGCTGCCGACTGCAGTGATATCCTGCGGCTGATCAAGGAATTGGCTAA ATACGAATACATGGAAGAACAAGTAATATTAACTGAAAAAGATCTGCTAGAAGATGGTTT CGGAGAGCACCCCTTCTACCACTGCCTGGTTGCAGAAGTGCCCAAGGAGCATCTAACTCC GGAAGGACACAGCATTGTTGGTTTTGCCATGTACTATTTTACTTATGACCCATGGATTGG CAAACTGTTGTATCTTGAGGACTTCTTCGTGATGAGTGATTATAGAGGCTTTGGCATAGG ATCAGAAATCCTGAAGAATCTAAGCCAGGTTGCAATGAAATGTCGCTGCAGCAGCATGCA CTTCTTGGTAGCTGAGTGGAATGAACCATCTATCAACTTCTACAAAAGAAGAGGTGCTTC TGATCTGTCCAGCGAAGAGGGATGGAGACTCTTCAAGATCGACAAGGAGTACTTGCTAAA AATGGCAGCAGAGGAATGAGGAGTGCTGGTGTAGATTGACAATGACAGCTTCCATTCTAT TTTAGAACAAATTCTCAACTTATCTTGCTTTCTATCCTATTCGTAGTGGAATAATAGAAT GAGCACCTATTCCAAAGCTTTATTACCAGTGGCGTTGTTGCATGTTTGAAATAAGGTCTC TTTACGATGACAGTCTTGTATGCCAATTGGAGTCAGGTTTCTCTCGAACATCTTTTGATA AACAACAAGGTGGTATGATAATGTCTATGAAAAAAACTTCATTCTTGTGAGTCATTTAAA TGTGTACAATGTACACACTGGTATTTAGAGTTTCTGTTTTGATTCTTTTTTAATAAACTG CCCTTTGATTTAAAAAAAAAAAAAAAAAAAAAAAAATTAATAATCCTTTATTTCTTACGA CAGTTTTCTTAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 695-2144, - strand, RNAz p=0.975412 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 695-2144, - strand, RNAz p=0.975412 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 3-226, gnl|bosTau2|chrX (37552844-37553067) | |
| 3-226, gnl|Hg17|chrX (23560969-23561192) | |
| 3-226, gnl|Mm7|chrX (150017432-150017208) | |
| 276-1453, gnl|bosTau2|chrX (37553428-37554632) | |
| 276-1453, gnl|Hg17|chrX (23561572-23562755) | |
| 276-1453, gnl|Mm7|chrX (150016792-150015592) | |
| 1804-1908, gnl|bosTau2|chrX (37554980-37555084) | |
| 1804-1908, gnl|canFam2|chrX (19416981-19417090) | |
| 1804-1908, gnl|canFam2|chrX (19416994-19417064) | |
| 1804-1908, gnl|danRer3|chr24 (18995831-18995939) | |
| 1804-1908, gnl|danRer3|chr5 (95987-96046) | |
| 1804-1908, gnl|dasNov1|scaffold_11089 (86180-86071) | |
| 1804-1908, gnl|dasNov1|scaffold_11089 (86167-86097) | |
| 1804-1908, gnl|echTel1|scaffold_309393 (88339-88230) | |
| 1804-1908, gnl|echTel1|scaffold_309393 (88326-88256) | |
| 1804-1908, gnl|fr1|chrUn (157286798-157286689) | |
| 1804-1908, gnl|galGal2|chr1 (111677311-111677202) | |
| 1804-1908, gnl|hg17|chr4 (128777299-128777360) | |
| 1804-1908, gnl|hg17|chrX (23563098-23563207) | |
| 1804-1908, gnl|Hg17|chrX (23563100-23563204) | |
| 1804-1908, gnl|loxAfr1|scaffold_24294 (39934-39878) | |
| 1804-1908, gnl|loxAfr1|scaffold_80630 (8507-8617) | |
| 1804-1908, gnl|mm7|chr5 (28827740-28827670) | |
| 1804-1908, gnl|mm7|chrX (150015246-150015137) | |
| 1804-1908, gnl|Mm7|chrX (150015242-150015138) | |
| 1804-1908, gnl|monDom2|scaffold_48 (8257703-8257594) | |
| 1804-1908, gnl|monDom2|scaffold_48 (8257690-8257620) | |
| 1804-1908, gnl|oryCun1|scaffold_139684 (1546-1625) | |
| 1804-1908, gnl|oryCun1|scaffold_212034 (30193-30251) | |
| 1804-1908, gnl|panTro1|chr3 (145623989-145624050) | |
| 1804-1908, gnl|panTro1|chrX (24398644-24398753) | |
| 1804-1908, gnl|rheMac2|chr5 (119824271-119824332) | |
| 1804-1908, gnl|rheMac2|chrX (21585917-21586026) | |
| 1804-1908, gnl|rn3|chrX (61690726-61690835) | |
| 1804-1908, gnl|rn3|chrX (61690739-61690809) | |
| 1804-1908, gnl|tetNig1|chrUn_random (52942430-52942539) | |
| 1804-1908, gnl|xenTro1|scaffold_100 (714142-714033) | |
| 1804-1908, gnl|xenTro1|scaffold_100 (715206-715159) | |
| 1946-2473, gnl|bosTau2|chrX (37555341-37555865) | |
| 1946-2473, gnl|Hg17|chrX (23563457-23563984) | |
| 1946-2473, gnl|Mm7|chrX (150014776-150014245) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-226, gnl|bosTau2|chrX (37552844-37553067) | |
| 3-226, gnl|Hg17|chrX (23560969-23561192) | |
| 3-226, gnl|Mm7|chrX (150017432-150017208) | |
| 276-1453, gnl|bosTau2|chrX (37553428-37554632) | |
| 276-1453, gnl|Hg17|chrX (23561572-23562755) | |
| 276-1453, gnl|Mm7|chrX (150016792-150015592) | |
| 1804-1908, gnl|bosTau2|chrX (37554980-37555084) | |
| 1804-1908, gnl|canFam2|chrX (19416981-19417090) | |
| 1804-1908, gnl|canFam2|chrX (19416994-19417064) | |
| 1804-1908, gnl|danRer3|chr24 (18995831-18995939) | |
| 1804-1908, gnl|danRer3|chr5 (95987-96046) | |
| 1804-1908, gnl|dasNov1|scaffold_11089 (86180-86071) | |
| 1804-1908, gnl|dasNov1|scaffold_11089 (86167-86097) | |
| 1804-1908, gnl|echTel1|scaffold_309393 (88339-88230) | |
| 1804-1908, gnl|echTel1|scaffold_309393 (88326-88256) | |
| 1804-1908, gnl|fr1|chrUn (157286798-157286689) | |
| 1804-1908, gnl|galGal2|chr1 (111677311-111677202) | |
| 1804-1908, gnl|hg17|chr4 (128777299-128777360) | |
| 1804-1908, gnl|hg17|chrX (23563098-23563207) | |
| 1804-1908, gnl|Hg17|chrX (23563100-23563204) | |
| 1804-1908, gnl|loxAfr1|scaffold_24294 (39934-39878) | |
| 1804-1908, gnl|loxAfr1|scaffold_80630 (8507-8617) | |
| 1804-1908, gnl|mm7|chr5 (28827740-28827670) | |
| 1804-1908, gnl|mm7|chrX (150015246-150015137) | |
| 1804-1908, gnl|Mm7|chrX (150015242-150015138) | |
| 1804-1908, gnl|monDom2|scaffold_48 (8257703-8257594) | |
| 1804-1908, gnl|monDom2|scaffold_48 (8257690-8257620) | |
| 1804-1908, gnl|oryCun1|scaffold_139684 (1546-1625) | |
| 1804-1908, gnl|oryCun1|scaffold_212034 (30193-30251) | |
| 1804-1908, gnl|panTro1|chr3 (145623989-145624050) | |
| 1804-1908, gnl|panTro1|chrX (24398644-24398753) | |
| 1804-1908, gnl|rheMac2|chr5 (119824271-119824332) | |
| 1804-1908, gnl|rheMac2|chrX (21585917-21586026) | |
| 1804-1908, gnl|rn3|chrX (61690726-61690835) | |
| 1804-1908, gnl|rn3|chrX (61690739-61690809) | |
| 1804-1908, gnl|tetNig1|chrUn_random (52942430-52942539) | |
| 1804-1908, gnl|xenTro1|scaffold_100 (714142-714033) | |
| 1804-1908, gnl|xenTro1|scaffold_100 (715206-715159) | |
| 1946-2473, gnl|bosTau2|chrX (37555341-37555865) | |
| 1946-2473, gnl|Hg17|chrX (23563457-23563984) | |
| 1946-2473, gnl|Mm7|chrX (150014776-150014245) |
| Expressed library(ies): 77 entry(ies) | More info |
| Expressed library(ies): 77 entry(ies) | Help | Less info |
| liv (7.4605) | |
| sug (6.61914) | |
| tra (5.16987) | |
| lin (3.64007) | |
| cte (2.63466) | |
| kid (2.59471) | |
| spl (2.57732) | |
| pro (2.56016) | |
| gul (2.48624) | |
| ret (2.44593) | |
| duo (2.41922) | |
| sin (2.27432) | |
| mga (2.24287) | |
| rec (1.90377) | |
| cmu (1.86393) | |
| lyg (1.86344) | |
| mgp (1.84544) | |
| thg (1.77507) | |
| bla (1.74086) | |
| cty (1.5612) | |
| csk (1.40746) | |
| spc (1.36039) | |
| ova (1.29132) | |
| tes (1.24688) | |
| aor (1.17165) | |
| cki (1.15664) | |
| fco (1.10046) | |
| cbl (1.03318) | |
| ski (1.02715) | |
| cut (1.01954) | |
| cbe (0.956938) | |
| lun (0.902935) | |
| sto (0.899119) | |
| fat (0.884564) | |
| fty (0.879198) | |
| nje (0.8296) | |
| pty (0.713572) | |
| lnt (0.711541) | |
| cje (0.660939) | |
| pgl (0.592417) | |
| col (0.585023) | |
| nlu (0.575043) | |
| jca (0.569801) | |
| mgm (0.541028) | |
| mcp (0.511945) | |
| clu (0.478583) | |
| cag (0.453583) | |
| hea (0.408998) | |
| eje (0.395335) | |
| elu (0.385356) | |
| nep (0.36785) | |
| fbs (0.350693) | |
| med (0.348756) | |
| fhi (0.339155) | |
| vin (0.332557) | |
| nco (0.323468) | |
| isp (0.300752) | |
| jej (0.296765) | |
| ldo (0.291008) | |
| hyp (0.285673) | |
| fce (0.271592) | |
| ste (0.270416) | |
| ute (0.265569) | |
| eru (0.240096) | |
| ece (0.229305) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| ill (0.175593) | |
| ton (0.1755) | |
| eye (0.170503) | |
| cli (0.152812) | |
| bfe (0.149858) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| ecc (0.115035) |
| Expressed library(ies): 77 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (7.4605) | |
| sug (6.61914) | |
| tra (5.16987) | |
| lin (3.64007) | |
| cte (2.63466) | |
| kid (2.59471) | |
| spl (2.57732) | |
| pro (2.56016) | |
| gul (2.48624) | |
| ret (2.44593) | |
| duo (2.41922) | |
| sin (2.27432) | |
| mga (2.24287) | |
| rec (1.90377) | |
| cmu (1.86393) | |
| lyg (1.86344) | |
| mgp (1.84544) | |
| thg (1.77507) | |
| bla (1.74086) | |
| cty (1.5612) | |
| csk (1.40746) | |
| spc (1.36039) | |
| ova (1.29132) | |
| tes (1.24688) | |
| aor (1.17165) | |
| cki (1.15664) | |
| fco (1.10046) | |
| cbl (1.03318) | |
| ski (1.02715) | |
| cut (1.01954) | |
| cbe (0.956938) | |
| lun (0.902935) | |
| sto (0.899119) | |
| fat (0.884564) | |
| fty (0.879198) | |
| nje (0.8296) | |
| pty (0.713572) | |
| lnt (0.711541) | |
| cje (0.660939) | |
| pgl (0.592417) | |
| col (0.585023) | |
| nlu (0.575043) | |
| jca (0.569801) | |
| mgm (0.541028) | |
| mcp (0.511945) | |
| clu (0.478583) | |
| cag (0.453583) | |
| hea (0.408998) | |
| eje (0.395335) | |
| elu (0.385356) | |
| nep (0.36785) | |
| fbs (0.350693) | |
| med (0.348756) | |
| fhi (0.339155) | |
| vin (0.332557) | |
| nco (0.323468) | |
| isp (0.300752) | |
| jej (0.296765) | |
| ldo (0.291008) | |
| hyp (0.285673) | |
| fce (0.271592) | |
| ste (0.270416) | |
| ute (0.265569) | |
| eru (0.240096) | |
| ece (0.229305) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| ill (0.175593) | |
| ton (0.1755) | |
| eye (0.170503) | |
| cli (0.152812) | |
| bfe (0.149858) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| ecc (0.115035) |