Non-Coding RNA Search

Ss1.1-rpro33_p18.5

Sequence:


               
               CATGAGCATTTTCTTCACTGTGTACGTGAGGTAATCATGCATCTTTGAGTGTAGCTTCGT
CTGGCCCCTCAAAAGAAAAGCACGTCACCGTAAGTGCAGTGGGGGTTTTTGGTTTGAATG
GATACCATCACTCTTTTCTCCACAAACAGTGCAGAGACCTGGCTGAGGTGGCAATTTGAA
CAGATTCCCTTGTGTTCCCTCTGCTTCTTCCGTCACTCCAGTAAGTAAATCACCACATGG
GGGAACCCAGGGGTCTGGGAAAATCAGCTGTGCTCAATAGCCAACCTCCCCTTCTGTGAA
AACCAGTGCAGGTGCAGCCATTTTGGTACCTCTTCTCATATGCACTCCGAATCAGGGTGT
TTTATATGAACTTATAAAGGATCAGCAAAAGCTGGAATAACCTGGTCATCTTGATTAGCG
AAATCAAAATAACAAAACTGGGTTGTCATTGTCACGGTAGATGAGCAACTCACCTCTTTT
CACTGTTGAACTGGTTCAGAAAAATCTTCAGAAAGAAAACACTCAGAAGTACAAATTGGG
AAAGTTAGGATGTCCTTTCTGAATTTTCCTTTCAAAAAGTTTATATTATATGAAATTACA
TAAAGCTACTAAACTACTTTGTATTCTATTAAGAGGTAGCTCCTAAGATGTAGTCTTGTT
TAATAGTTGTTGCACTATATCAAAGCTTTTTAAAGTGTAAACTCAGTTCTTCCTCTGTAG
AAAGGGAGCATTGTGTTACTGAATTTATTTATGCAGAGCATTGGTTGCGACCTGTAATTC
CAGCCATCCACACACCAGTCTGTTCTGAGGTGGCAACAGCACACGGGAAGATGAACTTTC
CCTATTTCTTTACCCCTTTTTCTTTGGTTGTATCTGATGACAATATGAGATGTTCTTAAT
AAAAGTTTTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGAGCATTTTCTTCACTGTGTACGTGAGGTAATCATGCATCTTTGAGTGTAGCTTCGT
CTGGCCCCTCAAAAGAAAAGCACGTCACCGTAAGTGCAGTGGGGGTTTTTGGTTTGAATG
GATACCATCACTCTTTTCTCCACAAACAGTGCAGAGACCTGGCTGAGGTGGCAATTTGAA
CAGATTCCCTTGTGTTCCCTCTGCTTCTTCCGTCACTCCAGTAAGTAAATCACCACATGG
GGGAACCCAGGGGTCTGGGAAAATCAGCTGTGCTCAATAGCCAACCTCCCCTTCTGTGAA
AACCAGTGCAGGTGCAGCCATTTTGGTACCTCTTCTCATATGCACTCCGAATCAGGGTGT
TTTATATGAACTTATAAAGGATCAGCAAAAGCTGGAATAACCTGGTCATCTTGATTAGCG
AAATCAAAATAACAAAACTGGGTTGTCATTGTCACGGTAGATGAGCAACTCACCTCTTTT
CACTGTTGAACTGGTTCAGAAAAATCTTCAGAAAGAAAACACTCAGAAGTACAAATTGGG
AAAGTTAGGATGTCCTTTCTGAATTTTCCTTTCAAAAAGTTTATATTATATGAAATTACA
TAAAGCTACTAAACTACTTTGTATTCTATTAAGAGGTAGCTCCTAAGATGTAGTCTTGTT
TAATAGTTGTTGCACTATATCAAAGCTTTTTAAAGTGTAAACTCAGTTCTTCCTCTGTAG
AAAGGGAGCATTGTGTTACTGAATTTATTTATGCAGAGCATTGGTTGCGACCTGTAATTC
CAGCCATCCACACACCAGTCTGTTCTGAGGTGGCAACAGCACACGGGAAGATGAACTTTC
CCTATTTCTTTACCCCTTTTTCTTTGGTTGTATCTGATGACAATATGAGATGTTCTTAAT
AAAAGTTTTATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               159-277, + strand, RNAz p=0.575716

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-277, + strand, RNAz p=0.575716

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_018170, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_018170, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-910, gnl|bosTau2|chr24 (16384328-16385220)
               

               
               1-910, gnl|Hg17|chr18 (31824698-31823803)
               

               
               1-910, gnl|Mm7|chr18 (24870450-24869630)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-910, gnl|bosTau2|chr24 (16384328-16385220)
               

               
               1-910, gnl|Hg17|chr18 (31824698-31823803)
               

               
               1-910, gnl|Mm7|chr18 (24870450-24869630)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               pro (0.512033)
               

               
               cbe (0.478469)
               

               
               sag (0.36543)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               eye (0.170503)
               

               
               ski (0.146735)
               

               
               ssp (0.13552)
               

               
               ret (0.128733)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               cbe (0.478469)
               

               
               sag (0.36543)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               eye (0.170503)
               

               
               ski (0.146735)
               

               
               ssp (0.13552)
               

               
               ret (0.128733)
               

               
               ldo (0.0970026)

	1-910, gnl\|bosTau2\|chr24 (16384328-16385220)
	1-910, gnl\|Hg17\|chr18 (31824698-31823803)
	1-910, gnl\|Mm7\|chr18 (24870450-24869630)

	pro (0.512033)
	cbe (0.478469)
	sag (0.36543)
	nms (0.213858)
	fcc (0.197785)
	aor (0.195274)
	eye (0.170503)
	ski (0.146735)
	ssp (0.13552)
	ret (0.128733)
	ldo (0.0970026)