Non-Coding RNA Search

Ss1.1-rpro35_i12.5

Sequence:


               
               GCTCGTATTTTTCTCCCTTCTTGGAGAACGCAACAGTTACACCACTAAAGGACTCTTTTG
GGAACTCGCTGTTCCCTGCTCACTACATTTCCAATAACTTGAGGAAAGCCAGCTTATTTC
CACACAGTTTCTGTTTATTTGGGTGCAATAGTTTAATATAGTCCTAAACACTGGAGAGAG
GAAACTCTTGACATTTTATTCTCTGATCACTAGCAGATAAATTCAAAGTGCCTTTGGGAC
CTAAAAAAAACAAGTGCTCATTTGAAGGAGGGAGACTGGGAAAATACACGGAAGTGTAGT
GTTTAGATTCATTACGAAGACTTGAAAATATTTATATTAGTATCGAGAACTTATTGATGT
TTCATTTCTTGGCAAGGCTTTGAAGAAATTATATGTATATCCTCAAGGATTTTAAACAGT
ATTTCACAAAGAATATGCTACTATTTATAAACACAAAAATGTTTGAGATGACTGTGAGCA
TATTTTTAAAGAAGTGAGGCTTTGAATTCTATTTTCCTCTTTTTCCTACCTCTCTTTACC
GCATAGGTCTTTTTACTTGGTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCGTATTTTTCTCCCTTCTTGGAGAACGCAACAGTTACACCACTAAAGGACTCTTTTG
GGAACTCGCTGTTCCCTGCTCACTACATTTCCAATAACTTGAGGAAAGCCAGCTTATTTC
CACACAGTTTCTGTTTATTTGGGTGCAATAGTTTAATATAGTCCTAAACACTGGAGAGAG
GAAACTCTTGACATTTTATTCTCTGATCACTAGCAGATAAATTCAAAGTGCCTTTGGGAC
CTAAAAAAAACAAGTGCTCATTTGAAGGAGGGAGACTGGGAAAATACACGGAAGTGTAGT
GTTTAGATTCATTACGAAGACTTGAAAATATTTATATTAGTATCGAGAACTTATTGATGT
TTCATTTCTTGGCAAGGCTTTGAAGAAATTATATGTATATCCTCAAGGATTTTAAACAGT
ATTTCACAAAGAATATGCTACTATTTATAAACACAAAAATGTTTGAGATGACTGTGAGCA
TATTTTTAAAGAAGTGAGGCTTTGAATTCTATTTTCCTCTTTTTCCTACCTCTCTTTACC
GCATAGGTCTTTTTACTTGGTTCC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-562, gnl|bosTau2|chr3 (39271881-39272428)
               

               
               1-562, gnl|Hg17|chr1 (94763907-94763384)
               

               
               1-562, gnl|Mm7|chr3 (121473682-121474653)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-562, gnl|bosTau2|chr3 (39271881-39272428)
               

               
               1-562, gnl|Hg17|chr1 (94763907-94763384)
               

               
               1-562, gnl|Mm7|chr3 (121473682-121474653)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pro (0.512033)
               

               
               bla (0.124347)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               bla (0.124347)

	1-562, gnl\|bosTau2\|chr3 (39271881-39272428)
	1-562, gnl\|Hg17\|chr1 (94763907-94763384)
	1-562, gnl\|Mm7\|chr3 (121473682-121474653)