Ss1.1-rpro36_c23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTATTATGTTCCCATTCCTTTTGCATCAGATTATATTTTGCATGTCTTACTGAGATGCT GTGTTAATTGCTCGAGTGCTTTCCTAATCTGCAGACCATTTATGTTTCCTGTCTGCGGTG TGCTATGTGTTAATGGAAGAACTCTGGTCAGTGTCTTAGATTAATTTTTCACAGGCATTT CCTGTTTCTAAATCTGCTGAATTGTGTACTGTTGCGATTCCAGACCTTTTCATGAGAATC AGAAACATTGTTAAATGGAGCCTGCCTAGATTGCTGTGTATTAACTAACTCTGCTTGGTT ATAGTAAATTGCCTCAGATAGCTTTCACATTTTTCTACTTTCCTTGTAGAAATAAAAGTT GTTTTGTTCTGAAAGCAAAGATATTCCTACCTCTAAAAAGCTTTCTTGAGAACTCTGAAA CAGTAGTTTTCTAGGGTGATTTTTAAATTTCAGTATTAGGAGAGTCTAGAATTTATTGAC ATAGATTCTACAGTTAGTATGATAGGAAAGGCAAAACTTTTTTTAAATTATTTTATTGGA GTATAGTTGACTTAAATGTCATGTTAGCTTCAGGTTACAGCAAAGTGAATCATTTATGCA AAACTTTTTTAATGTGGTGTGTCACATGTGCAGAAGTAGGCTTAAACAAATTGACTCTTG GGCAACAGATCTCCAGGGACCCAGGTTTAGATTCTCATGGTGTACTTAAAGTAATTGTAC TCTTGGTTTCAAGTAGTGTAGTGCCTGGGAGACTCCATTTCTGAAAACCATTTAAACATT TTTGAAAAATACCTCTGAAAAGGTAATGAATGCAAAATAGCACAGTATATAGGAAAGGAT GTTTCTTGTTGAAAAAAAAAAAAGCCATAAAACAAACTAATAATTTTCAAGAGGTAGAAT TTTAGTAGCAATAACAGTTTTGCATGTCACGTTAGATTGTATAGTAGACTACTGCTTGAG TTTGTGAGGCTCTGATCAACAGAGTTCCATGAAAGGAAAACGATGTTCTAGGTAAAGAGT ATATAAAAGGTACTTTCTCTTAAAAATATGAATGTGTGAAATGTCATTATGTGAGAAATA GCATCTTTTGTGTAAGTTAAGGTTAAAACCGTATTTGTTTCCTAGAGCAGAGGGGTAGCG CCATTGAATGAAACTTTTCTAATGCTTAACCTGGAAACAAATGTGCTGCTACTGATGTAG TCCCACTGAAGCTCATCATGTAGGGATTTTGCTTCTGATGTTTATTTAGCAACAGGCATT TATAAAATGACATACTCTTTGCTTTGTCACCTCATCTTTCTCCATTAGTTTCCTGGGTGT GTATATAGTTAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTATTATGTTCCCATTCCTTTTGCATCAGATTATATTTTGCATGTCTTACTGAGATGCT GTGTTAATTGCTCGAGTGCTTTCCTAATCTGCAGACCATTTATGTTTCCTGTCTGCGGTG TGCTATGTGTTAATGGAAGAACTCTGGTCAGTGTCTTAGATTAATTTTTCACAGGCATTT CCTGTTTCTAAATCTGCTGAATTGTGTACTGTTGCGATTCCAGACCTTTTCATGAGAATC AGAAACATTGTTAAATGGAGCCTGCCTAGATTGCTGTGTATTAACTAACTCTGCTTGGTT ATAGTAAATTGCCTCAGATAGCTTTCACATTTTTCTACTTTCCTTGTAGAAATAAAAGTT GTTTTGTTCTGAAAGCAAAGATATTCCTACCTCTAAAAAGCTTTCTTGAGAACTCTGAAA CAGTAGTTTTCTAGGGTGATTTTTAAATTTCAGTATTAGGAGAGTCTAGAATTTATTGAC ATAGATTCTACAGTTAGTATGATAGGAAAGGCAAAACTTTTTTTAAATTATTTTATTGGA GTATAGTTGACTTAAATGTCATGTTAGCTTCAGGTTACAGCAAAGTGAATCATTTATGCA AAACTTTTTTAATGTGGTGTGTCACATGTGCAGAAGTAGGCTTAAACAAATTGACTCTTG GGCAACAGATCTCCAGGGACCCAGGTTTAGATTCTCATGGTGTACTTAAAGTAATTGTAC TCTTGGTTTCAAGTAGTGTAGTGCCTGGGAGACTCCATTTCTGAAAACCATTTAAACATT TTTGAAAAATACCTCTGAAAAGGTAATGAATGCAAAATAGCACAGTATATAGGAAAGGAT GTTTCTTGTTGAAAAAAAAAAAAGCCATAAAACAAACTAATAATTTTCAAGAGGTAGAAT TTTAGTAGCAATAACAGTTTTGCATGTCACGTTAGATTGTATAGTAGACTACTGCTTGAG TTTGTGAGGCTCTGATCAACAGAGTTCCATGAAAGGAAAACGATGTTCTAGGTAAAGAGT ATATAAAAGGTACTTTCTCTTAAAAATATGAATGTGTGAAATGTCATTATGTGAGAAATA GCATCTTTTGTGTAAGTTAAGGTTAAAACCGTATTTGTTTCCTAGAGCAGAGGGGTAGCG CCATTGAATGAAACTTTTCTAATGCTTAACCTGGAAACAAATGTGCTGCTACTGATGTAG TCCCACTGAAGCTCATCATGTAGGGATTTTGCTTCTGATGTTTATTTAGCAACAGGCATT TATAAAATGACATACTCTTTGCTTTGTCACCTCATCTTTCTCCATTAGTTTCCTGGGTGT GTATATAGTTAG |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 1047-1318, gnl|bosTau2|chr10 (26085630-26085901) | |
| 1047-1318, gnl|canFam2|chr30 (11366122-11365660) | |
| 1047-1318, gnl|canFam2|chr30 (11365678-11366185) | |
| 1047-1318, gnl|dasNov1|scaffold_13889 (44555-45006) | |
| 1047-1318, gnl|dasNov1|scaffold_13889 (44980-44493) | |
| 1047-1318, gnl|echTel1|scaffold_300083 (16305-16765) | |
| 1047-1318, gnl|echTel1|scaffold_300083 (16740-16230) | |
| 1047-1318, gnl|hg17|chr1 (237246682-237247139) | |
| 1047-1318, gnl|hg17|chr15 (39382058-39382554) | |
| 1047-1318, gnl|Hg17|chr15 (39382057-39382324) | |
| 1047-1318, gnl|loxAfr1|scaffold_15528 (9086-9519) | |
| 1047-1318, gnl|loxAfr1|scaffold_15528 (9488-9006) | |
| 1047-1318, gnl|mm7|chr2 (119344896-119344505) | |
| 1047-1318, gnl|mm7|chr2 (119344509-119344966) | |
| 1047-1318, gnl|Mm7|chr2 (119344508-119344749) | |
| 1047-1318, gnl|monDom2|scaffold_12 (797926-798265) | |
| 1047-1318, gnl|monDom2|scaffold_12 (798273-797859) | |
| 1047-1318, gnl|panTro1|chr1 (221242592-221243047) | |
| 1047-1318, gnl|panTro1|chr16 (39326373-39326870) | |
| 1047-1318, gnl|rheMac2|chr7 (19689940-19689495) | |
| 1047-1318, gnl|rheMac2|chr7 (19689517-19690008) | |
| 1047-1318, gnl|rn3|chr3 (106015636-106015256) | |
| 1047-1318, gnl|rn3|chr3 (106015260-106015702) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1047-1318, gnl|bosTau2|chr10 (26085630-26085901) | |
| 1047-1318, gnl|canFam2|chr30 (11366122-11365660) | |
| 1047-1318, gnl|canFam2|chr30 (11365678-11366185) | |
| 1047-1318, gnl|dasNov1|scaffold_13889 (44555-45006) | |
| 1047-1318, gnl|dasNov1|scaffold_13889 (44980-44493) | |
| 1047-1318, gnl|echTel1|scaffold_300083 (16305-16765) | |
| 1047-1318, gnl|echTel1|scaffold_300083 (16740-16230) | |
| 1047-1318, gnl|hg17|chr1 (237246682-237247139) | |
| 1047-1318, gnl|hg17|chr15 (39382058-39382554) | |
| 1047-1318, gnl|Hg17|chr15 (39382057-39382324) | |
| 1047-1318, gnl|loxAfr1|scaffold_15528 (9086-9519) | |
| 1047-1318, gnl|loxAfr1|scaffold_15528 (9488-9006) | |
| 1047-1318, gnl|mm7|chr2 (119344896-119344505) | |
| 1047-1318, gnl|mm7|chr2 (119344509-119344966) | |
| 1047-1318, gnl|Mm7|chr2 (119344508-119344749) | |
| 1047-1318, gnl|monDom2|scaffold_12 (797926-798265) | |
| 1047-1318, gnl|monDom2|scaffold_12 (798273-797859) | |
| 1047-1318, gnl|panTro1|chr1 (221242592-221243047) | |
| 1047-1318, gnl|panTro1|chr16 (39326373-39326870) | |
| 1047-1318, gnl|rheMac2|chr7 (19689940-19689495) | |
| 1047-1318, gnl|rheMac2|chr7 (19689517-19690008) | |
| 1047-1318, gnl|rn3|chr3 (106015636-106015256) | |
| 1047-1318, gnl|rn3|chr3 (106015260-106015702) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| vin (0.997672) | |
| isp (0.601504) | |
| rec (0.519211) | |
| pro (0.512033) | |
| bla (0.373042) | |
| bfe (0.299715) | |
| ldo (0.291008) | |
| ste (0.270416) | |
| thg (0.253582) | |
| mgp (0.230681) | |
| aor (0.195274) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| fco (0.157208) | |
| liv (0.146284) | |
| ret (0.128733) | |
| tra (0.123092) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (0.997672) | |
| isp (0.601504) | |
| rec (0.519211) | |
| pro (0.512033) | |
| bla (0.373042) | |
| bfe (0.299715) | |
| ldo (0.291008) | |
| ste (0.270416) | |
| thg (0.253582) | |
| mgp (0.230681) | |
| aor (0.195274) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| fco (0.157208) | |
| liv (0.146284) | |
| ret (0.128733) | |
| tra (0.123092) |