Ss1.1-rpro36_g21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCGAGCCACCGCCAACTTAGGAGGATACGTACGTCCGTGGAGTGCGCCTGCGTAGCGGT GGAAGCCGCAGGTTTTTGAAACATGAAACCTTCACTCTTCCTGACCGCCCTTTGCTTGGG AATAGCCTCAGCTGCTCCAAAACTTGATCAAAATTTAGATGCAGACTGGTACAAGTGGAA GGCAACACACGGGAGACTCTATGGCATGAATGAAGAAGGATGGCGGAGAGCCGTATGGGA GAAGAATATGAAAATGATTGAACTGCACAATCAGGAATACAGCCAAGGGAAACATGGCTT CAGCATGGCCATGAATGCCTTTGGTGACATGACCAATGAAGAATTCAGGCAGGTGATGAA TGGCTTTCAAAACCAGAAGCACAAGAAGGGGAAAGTGTTCCACGAATCTCTGGTTCTTGA GGTCCCCAAATCGGTAGATTGGAGAGAAAAAGGCTATGTCACTGCCGTGAAGAATCAGGG TCAGTGTGGTTCTTGTTGGGCTTTTAGTGCCACCGGCGCCCTCGAAGGACAGATGTTCCG GAAAACCGGCAAGCTTGTTTCACTGAGTGAGCAGAACCTGGTGGACTGTTCTCGGCCTCA AGGCAATCAGGGCTGCAATGGTGGCCTAATGGATAATGCCTTCCAGTACGTGAAGGACAA TGGAGGCCTGGACACAGAGGAATCCTATCCGTACCTTGGAAGGGAAACAAACAGCTGTAC CTATAAGCCCGAGTGTTCTGCTGCCAACGACACCGGCTTCGTGGACATCCCTCAGCGGGA GAAGGCCCTTATGAAGGCAGTCGCAACTGTGGGGCCCATCTCTGTTGCTATTGATGCGGG CCATTCATCTTTCCAGTTCTATAAGTCAGGCATTTATTATGATCCAGACTGCAGCAGCAA AGACCTGGATCATGGTGTTTTGGTGGTTGGCTATGGCTTTGAAGGAACTGATTCAAATAG CAGTAAATTTTGGATTGTCAAGAACAGTTGGGGTCCAGAATGGGGCTGGAACGGCTACGT AAAAATGGCCAAAGACCAGAACAACCACTGTGGAATTTCCACAGCAGCCAGCTATCCCAC CGTGTGAGCTGACGGATGGTGAGAATAGAGGACCTGAGGACAGCACATCTGGAGGAATTT TATCTTAAAACTGACCAAACCCTTATTGTGTAAGATAAGACACTTGAATCATTGAGGATC CAAGTTGTGACTTGAATTCTGTGACATTTTTATAAGGGTAAAATGTTACCACTACTTTAA TTACTTGTTATAAATAGCTTTATAATGTTGAAGATTCATTGCTTAACTCTAAGACTTTTG AATTTTCATTTTTTTAAAGGATGTATAAAACTTTACCTTTTAAAATAAATTTGAATTCAG TACATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCGAGCCACCGCCAACTTAGGAGGATACGTACGTCCGTGGAGTGCGCCTGCGTAGCGGT GGAAGCCGCAGGTTTTTGAAACATGAAACCTTCACTCTTCCTGACCGCCCTTTGCTTGGG AATAGCCTCAGCTGCTCCAAAACTTGATCAAAATTTAGATGCAGACTGGTACAAGTGGAA GGCAACACACGGGAGACTCTATGGCATGAATGAAGAAGGATGGCGGAGAGCCGTATGGGA GAAGAATATGAAAATGATTGAACTGCACAATCAGGAATACAGCCAAGGGAAACATGGCTT CAGCATGGCCATGAATGCCTTTGGTGACATGACCAATGAAGAATTCAGGCAGGTGATGAA TGGCTTTCAAAACCAGAAGCACAAGAAGGGGAAAGTGTTCCACGAATCTCTGGTTCTTGA GGTCCCCAAATCGGTAGATTGGAGAGAAAAAGGCTATGTCACTGCCGTGAAGAATCAGGG TCAGTGTGGTTCTTGTTGGGCTTTTAGTGCCACCGGCGCCCTCGAAGGACAGATGTTCCG GAAAACCGGCAAGCTTGTTTCACTGAGTGAGCAGAACCTGGTGGACTGTTCTCGGCCTCA AGGCAATCAGGGCTGCAATGGTGGCCTAATGGATAATGCCTTCCAGTACGTGAAGGACAA TGGAGGCCTGGACACAGAGGAATCCTATCCGTACCTTGGAAGGGAAACAAACAGCTGTAC CTATAAGCCCGAGTGTTCTGCTGCCAACGACACCGGCTTCGTGGACATCCCTCAGCGGGA GAAGGCCCTTATGAAGGCAGTCGCAACTGTGGGGCCCATCTCTGTTGCTATTGATGCGGG CCATTCATCTTTCCAGTTCTATAAGTCAGGCATTTATTATGATCCAGACTGCAGCAGCAA AGACCTGGATCATGGTGTTTTGGTGGTTGGCTATGGCTTTGAAGGAACTGATTCAAATAG CAGTAAATTTTGGATTGTCAAGAACAGTTGGGGTCCAGAATGGGGCTGGAACGGCTACGT AAAAATGGCCAAAGACCAGAACAACCACTGTGGAATTTCCACAGCAGCCAGCTATCCCAC CGTGTGAGCTGACGGATGGTGAGAATAGAGGACCTGAGGACAGCACATCTGGAGGAATTT TATCTTAAAACTGACCAAACCCTTATTGTGTAAGATAAGACACTTGAATCATTGAGGATC CAAGTTGTGACTTGAATTCTGTGACATTTTTATAAGGGTAAAATGTTACCACTACTTTAA TTACTTGTTATAAATAGCTTTATAATGTTGAAGATTCATTGCTTAACTCTAAGACTTTTG AATTTTCATTTTTTTAAAGGATGTATAAAACTTTACCTTTTAAAATAAATTTGAATTCAG TACATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 985-1295, + strand, RNAz p=0.790412 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 985-1295, + strand, RNAz p=0.790412 |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 70-208, gnl|bosTau2|chr8 (47002153-47002291) | |
| 70-208, gnl|canFam2|chr1 (72995801-72995678) | |
| 70-208, gnl|canFam2|chr1 (72995607-72995786) | |
| 70-208, gnl|danRer3|chr5 (43710643-43710515) | |
| 70-208, gnl|dasNov1|scaffold_18578 (6415-6290) | |
| 70-208, gnl|dasNov1|scaffold_18578 (6220-6398) | |
| 70-208, gnl|echTel1|scaffold_12356 (1851-1726) | |
| 70-208, gnl|echTel1|scaffold_163053 (1816-2014) | |
| 70-208, gnl|hg17|chr10 (46211376-46211501) | |
| 70-208, gnl|hg17|chr9 (87616872-87617038) | |
| 70-208, gnl|Hg17|chr9 (87688610-87688737) | |
| 70-208, gnl|loxAfr1|scaffold_22413 (20691-20566) | |
| 70-208, gnl|loxAfr1|scaffold_22413 (20493-20674) | |
| 70-208, gnl|mm7|chr13 (59964081-59964198) | |
| 70-208, gnl|mm7|chr13 (59910834-59910656) | |
| 70-208, gnl|Mm7|chr13 (62197460-62197322) | |
| 70-208, gnl|monDom2|scaffold_83 (2401037-2401145) | |
| 70-208, gnl|monDom2|scaffold_83 (2401203-2401037) | |
| 70-208, gnl|oryCun1|scaffold_184365 (3885-4009) | |
| 70-208, gnl|oryCun1|scaffold_184365 (4080-3901) | |
| 70-208, gnl|panTro1|chr11 (71662197-71662375) | |
| 70-208, gnl|panTro1|chr8 (90818585-90818710) | |
| 70-208, gnl|rheMac2|chr15 (96309242-96309127) | |
| 70-208, gnl|rheMac2|chr15 (96309057-96309225) | |
| 70-208, gnl|rn3|chr17 (9513592-9513470) | |
| 70-208, gnl|rn3|chr17 (9576405-9576584) | |
| 70-208, gnl|xenTro1|scaffold_528 (559589-559476) | |
| 475-700, gnl|bosTau2|chr3 (16775433-16775652) | |
| 475-700, gnl|canFam2|chr17 (63013865-63014086) | |
| 475-700, gnl|danRer3|chr12 (10134713-10134486) | |
| 475-700, gnl|dasNov1|scaffold_33825 (41535-41321) | |
| 475-700, gnl|echTel1|scaffold_324356 (48303-48082) | |
| 475-700, gnl|fr1|chrUn (304988244-304988021) | |
| 475-700, gnl|galGal2|chrZ_random (13966455-13966230) | |
| 475-700, gnl|hg17|chr1 (147589565-147589786) | |
| 475-700, gnl|Hg17|chr1 (147589792-147589573) | |
| 475-700, gnl|loxAfr1|scaffold_4180 (46202-45989) | |
| 475-700, gnl|mm7|chr3 (95376756-95376535) | |
| 475-700, gnl|Mm7|chr3 (95376527-95376746) | |
| 475-700, gnl|monDom2|scaffold_44 (3976155-3976376) | |
| 475-700, gnl|oryCun1|scaffold_155924 (10740-10961) | |
| 475-700, gnl|panTro1|chr1 (129321784-129322005) | |
| 475-700, gnl|rheMac2|chr1 (129207574-129207795) | |
| 475-700, gnl|rn3|chr2 (190362266-190362045) | |
| 475-700, gnl|tetNig1|chrUn_random (41089338-41089555) | |
| 475-700, gnl|xenTro1|scaffold_122 (1820839-1820618) | |
| 477-694, gnl|bosTau2|chr3 (16806332-16806552) | |
| 477-694, gnl|Hg17|chr1 (147537559-147537339) | |
| 477-694, gnl|Mm7|chr3 (95419280-95419503) | |
| 985-1388, gnl|bosTau2|chr8 (47005524-47005926) | |
| 985-1388, gnl|Hg17|chr9 (87691688-87692069) | |
| 985-1388, gnl|Mm7|chr13 (62192497-62192090) | |
| 1130-1383, gnl|bosTau2|chr5 (70705553-70705307) | |
| 1130-1383, gnl|Hg17|chr9 (96874743-96874501) | |
| 1130-1383, gnl|Mm7|chr6 (121585970-121586213) | |
| 1219-1338, gnl|bosTau2|chr22 (8586924-8587035) | |
| 1219-1338, gnl|Hg17|chr9 (96874654-96874537) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 70-208, gnl|bosTau2|chr8 (47002153-47002291) | |
| 70-208, gnl|canFam2|chr1 (72995801-72995678) | |
| 70-208, gnl|canFam2|chr1 (72995607-72995786) | |
| 70-208, gnl|danRer3|chr5 (43710643-43710515) | |
| 70-208, gnl|dasNov1|scaffold_18578 (6415-6290) | |
| 70-208, gnl|dasNov1|scaffold_18578 (6220-6398) | |
| 70-208, gnl|echTel1|scaffold_12356 (1851-1726) | |
| 70-208, gnl|echTel1|scaffold_163053 (1816-2014) | |
| 70-208, gnl|hg17|chr10 (46211376-46211501) | |
| 70-208, gnl|hg17|chr9 (87616872-87617038) | |
| 70-208, gnl|Hg17|chr9 (87688610-87688737) | |
| 70-208, gnl|loxAfr1|scaffold_22413 (20691-20566) | |
| 70-208, gnl|loxAfr1|scaffold_22413 (20493-20674) | |
| 70-208, gnl|mm7|chr13 (59964081-59964198) | |
| 70-208, gnl|mm7|chr13 (59910834-59910656) | |
| 70-208, gnl|Mm7|chr13 (62197460-62197322) | |
| 70-208, gnl|monDom2|scaffold_83 (2401037-2401145) | |
| 70-208, gnl|monDom2|scaffold_83 (2401203-2401037) | |
| 70-208, gnl|oryCun1|scaffold_184365 (3885-4009) | |
| 70-208, gnl|oryCun1|scaffold_184365 (4080-3901) | |
| 70-208, gnl|panTro1|chr11 (71662197-71662375) | |
| 70-208, gnl|panTro1|chr8 (90818585-90818710) | |
| 70-208, gnl|rheMac2|chr15 (96309242-96309127) | |
| 70-208, gnl|rheMac2|chr15 (96309057-96309225) | |
| 70-208, gnl|rn3|chr17 (9513592-9513470) | |
| 70-208, gnl|rn3|chr17 (9576405-9576584) | |
| 70-208, gnl|xenTro1|scaffold_528 (559589-559476) | |
| 475-700, gnl|bosTau2|chr3 (16775433-16775652) | |
| 475-700, gnl|canFam2|chr17 (63013865-63014086) | |
| 475-700, gnl|danRer3|chr12 (10134713-10134486) | |
| 475-700, gnl|dasNov1|scaffold_33825 (41535-41321) | |
| 475-700, gnl|echTel1|scaffold_324356 (48303-48082) | |
| 475-700, gnl|fr1|chrUn (304988244-304988021) | |
| 475-700, gnl|galGal2|chrZ_random (13966455-13966230) | |
| 475-700, gnl|hg17|chr1 (147589565-147589786) | |
| 475-700, gnl|Hg17|chr1 (147589792-147589573) | |
| 475-700, gnl|loxAfr1|scaffold_4180 (46202-45989) | |
| 475-700, gnl|mm7|chr3 (95376756-95376535) | |
| 475-700, gnl|Mm7|chr3 (95376527-95376746) | |
| 475-700, gnl|monDom2|scaffold_44 (3976155-3976376) | |
| 475-700, gnl|oryCun1|scaffold_155924 (10740-10961) | |
| 475-700, gnl|panTro1|chr1 (129321784-129322005) | |
| 475-700, gnl|rheMac2|chr1 (129207574-129207795) | |
| 475-700, gnl|rn3|chr2 (190362266-190362045) | |
| 475-700, gnl|tetNig1|chrUn_random (41089338-41089555) | |
| 475-700, gnl|xenTro1|scaffold_122 (1820839-1820618) | |
| 477-694, gnl|bosTau2|chr3 (16806332-16806552) | |
| 477-694, gnl|Hg17|chr1 (147537559-147537339) | |
| 477-694, gnl|Mm7|chr3 (95419280-95419503) | |
| 985-1388, gnl|bosTau2|chr8 (47005524-47005926) | |
| 985-1388, gnl|Hg17|chr9 (87691688-87692069) | |
| 985-1388, gnl|Mm7|chr13 (62192497-62192090) | |
| 1130-1383, gnl|bosTau2|chr5 (70705553-70705307) | |
| 1130-1383, gnl|Hg17|chr9 (96874743-96874501) | |
| 1130-1383, gnl|Mm7|chr6 (121585970-121586213) | |
| 1219-1338, gnl|bosTau2|chr22 (8586924-8587035) | |
| 1219-1338, gnl|Hg17|chr9 (96874654-96874537) |
| Expressed library(ies): 74 entry(ies) | More info |
| Expressed library(ies): 74 entry(ies) | Help | Less info |
| cki (5.78321) | |
| kid (3.37312) | |
| thg (3.16977) | |
| mga (3.0439) | |
| cmu (2.98229) | |
| sto (2.87718) | |
| aor (2.14802) | |
| lun (2.10685) | |
| ski (1.76082) | |
| gul (1.5983) | |
| rec (1.38456) | |
| ret (1.28733) | |
| tra (1.23092) | |
| sme (1.22175) | |
| isp (1.20301) | |
| nmm (1.19522) | |
| cut (1.18946) | |
| vin (0.997672) | |
| bla (0.994777) | |
| mgp (0.922722) | |
| ova (0.903926) | |
| sug (0.891039) | |
| cte (0.87822) | |
| csk (0.844476) | |
| cst (0.840218) | |
| lyg (0.798616) | |
| sag (0.730861) | |
| fty (0.703359) | |
| tbr (0.616713) | |
| fli (0.608643) | |
| med (0.58126) | |
| spl (0.572738) | |
| ssp (0.542079) | |
| mgm (0.541028) | |
| pro (0.512033) | |
| cje (0.495704) | |
| cli (0.458435) | |
| eli (0.455443) | |
| bfe (0.449573) | |
| fat (0.442282) | |
| lin (0.436808) | |
| nms (0.427716) | |
| che (0.408942) | |
| ldo (0.38801) | |
| mcp (0.341297) | |
| spc (0.340097) | |
| nje (0.33184) | |
| eje (0.296501) | |
| cga (0.279096) | |
| ste (0.270416) | |
| ese (0.253004) | |
| eep (0.245128) | |
| cbe (0.239234) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| hea (0.204499) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| fco (0.157208) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| eru (0.120048) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 74 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (5.78321) | |
| kid (3.37312) | |
| thg (3.16977) | |
| mga (3.0439) | |
| cmu (2.98229) | |
| sto (2.87718) | |
| aor (2.14802) | |
| lun (2.10685) | |
| ski (1.76082) | |
| gul (1.5983) | |
| rec (1.38456) | |
| ret (1.28733) | |
| tra (1.23092) | |
| sme (1.22175) | |
| isp (1.20301) | |
| nmm (1.19522) | |
| cut (1.18946) | |
| vin (0.997672) | |
| bla (0.994777) | |
| mgp (0.922722) | |
| ova (0.903926) | |
| sug (0.891039) | |
| cte (0.87822) | |
| csk (0.844476) | |
| cst (0.840218) | |
| lyg (0.798616) | |
| sag (0.730861) | |
| fty (0.703359) | |
| tbr (0.616713) | |
| fli (0.608643) | |
| med (0.58126) | |
| spl (0.572738) | |
| ssp (0.542079) | |
| mgm (0.541028) | |
| pro (0.512033) | |
| cje (0.495704) | |
| cli (0.458435) | |
| eli (0.455443) | |
| bfe (0.449573) | |
| fat (0.442282) | |
| lin (0.436808) | |
| nms (0.427716) | |
| che (0.408942) | |
| ldo (0.38801) | |
| mcp (0.341297) | |
| spc (0.340097) | |
| nje (0.33184) | |
| eje (0.296501) | |
| cga (0.279096) | |
| ste (0.270416) | |
| ese (0.253004) | |
| eep (0.245128) | |
| cbe (0.239234) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| hea (0.204499) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| fco (0.157208) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| eru (0.120048) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) |