Ss1.1-rpro37_n7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAATATAAAATAGTGATTGCTGGGAATCATGAACTGACATTTGATAAGGAATTCATGGCA GACCTTGTTAAACAGGACTACTACCGTTTCCCCTCTGTGTCCAAATTGAAACCAGAGGAC TTTGACAACGTTCAGTCCCTCCTGACAAACAGTATTTACTTACAAGACTCAGAGGTAACA GTGAAGGGATTCAGGATATACGGTGCACCTTGGACCCCGTGGTTTAATGGATGGGGCTTT AACCTACCCAGAGGTCAGTCTCTGCTGGACAAGTGGAACCTCATCCCCGAGGGCATTGAC ATTCTCATGACACACGGACCTCCTCTAGGTTTTCGAGACTGGGTTCCAAAGGAACTTCAG AGAGTGGGCTGCGTGGAGCTTTTAAACACAGTCCAGCGGCGAGTCCGGCCCAAACTCCAT GTGTTTGGTGGAATCCATGAAGGTTACGGCATCATGACCGACGGTTACACAACATACATC AATGCCTCTACGTGTACAGTCAGCTTTCAACCGACCAATCCTCCAATTATATTTGACCTT CCAAACCCACAGGGTTCCTGAAGCTCCAAAAGCCCAATTGGAATGCGAGGGAAGGTCTAA AACTGCCATTTTTCTAATTATAAACTTACATTCTCTTCCTTGTTTATTTACCGATCCTGT GAGTTCTTTTTGTAAATTGCTGGAACACAAATGATGCTAGAGGTTGTGCTTCTTCTTCTT TTTTTTAAATGGGGCATCCGTTTGGAATCAAAGGAGCGTTGTGAATTTGTAAAATGACTC CTGTTTTTCTCAAAGGCCACGCCATTGTAAATTGTTAGTGTTCGCCAAAGGACAGCCAAG CTTTCTTTTGAAAAGGTGACAAAAGTCTTATTTTAATATGCTTTAAGCTGGAAAAGAAAA AGAAAAAGAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAATATAAAATAGTGATTGCTGGGAATCATGAACTGACATTTGATAAGGAATTCATGGCA GACCTTGTTAAACAGGACTACTACCGTTTCCCCTCTGTGTCCAAATTGAAACCAGAGGAC TTTGACAACGTTCAGTCCCTCCTGACAAACAGTATTTACTTACAAGACTCAGAGGTAACA GTGAAGGGATTCAGGATATACGGTGCACCTTGGACCCCGTGGTTTAATGGATGGGGCTTT AACCTACCCAGAGGTCAGTCTCTGCTGGACAAGTGGAACCTCATCCCCGAGGGCATTGAC ATTCTCATGACACACGGACCTCCTCTAGGTTTTCGAGACTGGGTTCCAAAGGAACTTCAG AGAGTGGGCTGCGTGGAGCTTTTAAACACAGTCCAGCGGCGAGTCCGGCCCAAACTCCAT GTGTTTGGTGGAATCCATGAAGGTTACGGCATCATGACCGACGGTTACACAACATACATC AATGCCTCTACGTGTACAGTCAGCTTTCAACCGACCAATCCTCCAATTATATTTGACCTT CCAAACCCACAGGGTTCCTGAAGCTCCAAAAGCCCAATTGGAATGCGAGGGAAGGTCTAA AACTGCCATTTTTCTAATTATAAACTTACATTCTCTTCCTTGTTTATTTACCGATCCTGT GAGTTCTTTTTGTAAATTGCTGGAACACAAATGATGCTAGAGGTTGTGCTTCTTCTTCTT TTTTTTAAATGGGGCATCCGTTTGGAATCAAAGGAGCGTTGTGAATTTGTAAAATGACTC CTGTTTTTCTCAAAGGCCACGCCATTGTAAATTGTTAGTGTTCGCCAAAGGACAGCCAAG CTTTCTTTTGAAAAGGTGACAAAAGTCTTATTTTAATATGCTTTAAGCTGGAAAAGAAAA AGAAAAAGAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 480-635, - strand, RNAz p=0.829518 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 480-635, - strand, RNAz p=0.829518 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 212-330, gnl|bosTau2|chr15 (37968349-37968467) | |
| 212-330, gnl|canFam2|chr18 (39942886-39942735) | |
| 212-330, gnl|danRer3|chr7 (6956751-6956612) | |
| 212-330, gnl|dasNov1|scaffold_7226 (71003-71154) | |
| 212-330, gnl|echTel1|scaffold_267228 (5971-5820) | |
| 212-330, gnl|fr1|chrUn (304270136-304270263) | |
| 212-330, gnl|galGal2|chr3 (43913497-43913345) | |
| 212-330, gnl|hg17|chr11 (30395632-30395783) | |
| 212-330, gnl|Hg17|chr11 (30395757-30395639) | |
| 212-330, gnl|loxAfr1|scaffold_9752 (27172-27020) | |
| 212-330, gnl|mm7|chr2 (106712401-106712252) | |
| 212-330, gnl|Mm7|chr2 (106712274-106712392) | |
| 212-330, gnl|monDom2|scaffold_10 (76275762-76275913) | |
| 212-330, gnl|oryCun1|scaffold_204460 (51342-51223) | |
| 212-330, gnl|panTro1|chr9 (30744074-30744225) | |
| 212-330, gnl|rheMac2|chr14 (41353397-41353246) | |
| 212-330, gnl|rn3|chr3 (92260936-92260789) | |
| 212-330, gnl|tetNig1|chrUn_random (116625829-116625961) | |
| 212-330, gnl|xenTro1|scaffold_121 (259250-259112) | |
| 441-911, gnl|bosTau2|chr15 (37976855-37977330) | |
| 441-911, gnl|Hg17|chr11 (30389711-30389244) | |
| 441-911, gnl|Mm7|chr2 (106717733-106718248) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 212-330, gnl|bosTau2|chr15 (37968349-37968467) | |
| 212-330, gnl|canFam2|chr18 (39942886-39942735) | |
| 212-330, gnl|danRer3|chr7 (6956751-6956612) | |
| 212-330, gnl|dasNov1|scaffold_7226 (71003-71154) | |
| 212-330, gnl|echTel1|scaffold_267228 (5971-5820) | |
| 212-330, gnl|fr1|chrUn (304270136-304270263) | |
| 212-330, gnl|galGal2|chr3 (43913497-43913345) | |
| 212-330, gnl|hg17|chr11 (30395632-30395783) | |
| 212-330, gnl|Hg17|chr11 (30395757-30395639) | |
| 212-330, gnl|loxAfr1|scaffold_9752 (27172-27020) | |
| 212-330, gnl|mm7|chr2 (106712401-106712252) | |
| 212-330, gnl|Mm7|chr2 (106712274-106712392) | |
| 212-330, gnl|monDom2|scaffold_10 (76275762-76275913) | |
| 212-330, gnl|oryCun1|scaffold_204460 (51342-51223) | |
| 212-330, gnl|panTro1|chr9 (30744074-30744225) | |
| 212-330, gnl|rheMac2|chr14 (41353397-41353246) | |
| 212-330, gnl|rn3|chr3 (92260936-92260789) | |
| 212-330, gnl|tetNig1|chrUn_random (116625829-116625961) | |
| 212-330, gnl|xenTro1|scaffold_121 (259250-259112) | |
| 441-911, gnl|bosTau2|chr15 (37976855-37977330) | |
| 441-911, gnl|Hg17|chr11 (30389711-30389244) | |
| 441-911, gnl|Mm7|chr2 (106717733-106718248) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| pro (0.512033) | |
| nep (0.183925) | |
| pla (0.133672) | |
| sug (0.127291) | |
| bla (0.124347) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ecc (0.115035) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| nep (0.183925) | |
| pla (0.133672) | |
| sug (0.127291) | |
| bla (0.124347) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ecc (0.115035) |