Non-Coding RNA Search

Ss1.1-rpro38_c17.5

Sequence:


               
               AGGTCTGGCAGCCAGAAGTGCTGCCAGGATTGCTCCGCAAAGATCAGAGAACAGAGGAAC
ATACCAGGGACTTCCTGAAGGAGGAAGGCAGTCCGTTTCCCAGGGCACAGGACTTCCAAG
CTTCTCGTAGCCAGACCATCTACCTTCCTCATGTGCTCCCTGCTACTTCTCCTGGGAATT
TCTTATACCAGCAAAACAGTCCAAGCTTTGTTTTTTGGTCTGCCCTGCTCTGAATAGCTT
GGGATGCTAAACTCTCTTCAGAGAGAGTTTTTATATATATATTTATATAGAGAGATTTTT
ATAGTTTTGATACAAGGTCATGACTCCCCTAGAATTTCCCTTATTTTAAAAAATCAGCAA
AGTTCAGGAGTTCCCTGGTGGCCTAGCAGCTAAGGATCCAGCACTGTCACTGCTATGGCT
CGGGTCACTGCTGTGATGTGGGTTTGATCCCTGGCCCAGGAACTTCCACAAGCCACAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTCTGGCAGCCAGAAGTGCTGCCAGGATTGCTCCGCAAAGATCAGAGAACAGAGGAAC
ATACCAGGGACTTCCTGAAGGAGGAAGGCAGTCCGTTTCCCAGGGCACAGGACTTCCAAG
CTTCTCGTAGCCAGACCATCTACCTTCCTCATGTGCTCCCTGCTACTTCTCCTGGGAATT
TCTTATACCAGCAAAACAGTCCAAGCTTTGTTTTTTGGTCTGCCCTGCTCTGAATAGCTT
GGGATGCTAAACTCTCTTCAGAGAGAGTTTTTATATATATATTTATATAGAGAGATTTTT
ATAGTTTTGATACAAGGTCATGACTCCCCTAGAATTTCCCTTATTTTAAAAAATCAGCAA
AGTTCAGGAGTTCCCTGGTGGCCTAGCAGCTAAGGATCCAGCACTGTCACTGCTATGGCT
CGGGTCACTGCTGTGATGTGGGTTTGATCCCTGGCCCAGGAACTTCCACAAGCCACAGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-310, - strand, RNAz p=0.997681

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-310, - strand, RNAz p=0.997681

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-366, gnl|bosTau2|chr13 (42313825-42313465)
               

               
               1-366, gnl|Hg17|chr20 (30286191-30286543)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-366, gnl|bosTau2|chr13 (42313825-42313465)
               

               
               1-366, gnl|Hg17|chr20 (30286191-30286543)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pro (0.512033)
               

               
               cga (0.279096)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               cga (0.279096)
               

               
               cty (0.10408)

	1-366, gnl\|bosTau2\|chr13 (42313825-42313465)
	1-366, gnl\|Hg17\|chr20 (30286191-30286543)