Ss1.1-rptbr0101_f7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATTTTAACACTTTTGGAATTGATTTTTGTGTCTGTATGAGATACGAATTTTAAATGTTC TTGATTAACAGGCAATTATAATAAAGCAGTTTGATCCTTGGGTGGTGGTTTTGCTTGGAC AACTTAGGTTATGGTCGAATTTGAAGTTTTAAGGTTTGTTTTAGTTATAGCTATGGACGG TCACATTTCTCCTAGAGAGCAAGAACCTGTAGAAGGTAAATTCCTTGATTTTTTGACTCT GTTTTCTTTCTTTTTATTTTACTTGGGAATTAGGATGAGTCCCTTCCAATAGCAGGGAGT AGGGAAAGGTGAGCCAGCAAAAGAGACATAGAAACTGTGTCCAAGTCATTTTCTGGGACC AGGGATGGAAACGGATTCTTCTATGGAGAGACTTGCCTTGGCAGGTGAGGTAGACTATGA TTTACTAGCAACAGCTCTGGCTGTAATTTAACTGCCTTAAAAATGCTGCACTCTTAAGTT CTGGCTTAGGAAACTTTTGGTGTTTTGGTGGATTATGGTCAGATAGTTTTCGAAGATGTT CTCAGTGCAACTGAGTCTTGGGGAGCAGACATGGGAATCCGAAGGGAGCAGTATAAAGAA GGCCCAGCAAGCTGTCGCTAATAAGGCTTTAGCTGAATCTACGCTTCCCAAACCAGTTCA GAAGCCACCCAAAAGTAATGTTAATAATAACCCAGGTAGTATAACTCCAACTGTGGAACT GAATGGGCTTGCTATGAAAAGGGGAGAGCCTGCCATCTACAGGCCATTAGATCCAAAGCC TTTCCCAAATTATAGAGCTAATTACAACTTTCGGGGCATGTACAATCAGAGGTATCATTG CCCAATACCCAAGATCTTCTATGTTCAGCTGACAGTAGGAAATAATGAAACTGTGAACTG AGGAAAGACTCGACAAGCCGCTAGACACAATGCCGCAATGAAAGCCCTTCAAGCACTGCA TGTGAGGCTTAATCCAGAAAAATCAGCTCAGAATGGCGAATCAGGAAAAGAAATGGATGA TGACAAAGATGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATTTTAACACTTTTGGAATTGATTTTTGTGTCTGTATGAGATACGAATTTTAAATGTTC TTGATTAACAGGCAATTATAATAAAGCAGTTTGATCCTTGGGTGGTGGTTTTGCTTGGAC AACTTAGGTTATGGTCGAATTTGAAGTTTTAAGGTTTGTTTTAGTTATAGCTATGGACGG TCACATTTCTCCTAGAGAGCAAGAACCTGTAGAAGGTAAATTCCTTGATTTTTTGACTCT GTTTTCTTTCTTTTTATTTTACTTGGGAATTAGGATGAGTCCCTTCCAATAGCAGGGAGT AGGGAAAGGTGAGCCAGCAAAAGAGACATAGAAACTGTGTCCAAGTCATTTTCTGGGACC AGGGATGGAAACGGATTCTTCTATGGAGAGACTTGCCTTGGCAGGTGAGGTAGACTATGA TTTACTAGCAACAGCTCTGGCTGTAATTTAACTGCCTTAAAAATGCTGCACTCTTAAGTT CTGGCTTAGGAAACTTTTGGTGTTTTGGTGGATTATGGTCAGATAGTTTTCGAAGATGTT CTCAGTGCAACTGAGTCTTGGGGAGCAGACATGGGAATCCGAAGGGAGCAGTATAAAGAA GGCCCAGCAAGCTGTCGCTAATAAGGCTTTAGCTGAATCTACGCTTCCCAAACCAGTTCA GAAGCCACCCAAAAGTAATGTTAATAATAACCCAGGTAGTATAACTCCAACTGTGGAACT GAATGGGCTTGCTATGAAAAGGGGAGAGCCTGCCATCTACAGGCCATTAGATCCAAAGCC TTTCCCAAATTATAGAGCTAATTACAACTTTCGGGGCATGTACAATCAGAGGTATCATTG CCCAATACCCAAGATCTTCTATGTTCAGCTGACAGTAGGAAATAATGAAACTGTGAACTG AGGAAAGACTCGACAAGCCGCTAGACACAATGCCGCAATGAAAGCCCTTCAAGCACTGCA TGTGAGGCTTAATCCAGAAAAATCAGCTCAGAATGGCGAATCAGGAAAAGAAATGGATGA TGACAAAGATGC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 36-530, gnl|bosTau2|chr14 (20919676-20920170) | |
| 36-530, gnl|Hg17|chr8 (74789307-74788501) | |
| 830-991, gnl|bosTau2|chr14 (21002095-21002256) | |
| 830-991, gnl|canFam2|chr29 (25176575-25176766) | |
| 830-991, gnl|canFam2|chr29 (25176580-25176692) | |
| 830-991, gnl|danRer3|chr24 (17225466-17225652) | |
| 830-991, gnl|danRer3|chr24 (17225471-17225583) | |
| 830-991, gnl|dasNov1|scaffold_8505 (43295-43482) | |
| 830-991, gnl|dasNov1|scaffold_8505 (43300-43412) | |
| 830-991, gnl|echTel1|scaffold_102235 (7143-7033) | |
| 830-991, gnl|echTel1|scaffold_218940 (1662-1847) | |
| 830-991, gnl|fr1|chrUn (44810544-44810357) | |
| 830-991, gnl|fr1|chrUn (44810523-44810427) | |
| 830-991, gnl|galGal2|chr2 (117410388-117410575) | |
| 830-991, gnl|hg17|chr8 (74692080-74692267) | |
| 830-991, gnl|Hg17|chr8 (74692242-74692081) | |
| 830-991, gnl|hg17|chrX (89101329-89101428) | |
| 830-991, gnl|loxAfr1|scaffold_31201 (1591-1406) | |
| 830-991, gnl|loxAfr1|scaffold_583 (26551-26632) | |
| 830-991, gnl|mm7|chr1 (16582152-16582339) | |
| 830-991, gnl|mm7|chr1 (16582158-16582269) | |
| 830-991, gnl|Mm7|chr1 (16582314-16582153) | |
| 830-991, gnl|monDom2|scaffold_4 (86878322-86878135) | |
| 830-991, gnl|monDom2|scaffold_4 (86878317-86878205) | |
| 830-991, gnl|oryCun1|scaffold_157186 (15957-16121) | |
| 830-991, gnl|oryCun1|scaffold_189215 (5267-5379) | |
| 830-991, gnl|panTro1|chr7 (76729775-76729962) | |
| 830-991, gnl|panTro1|chrX (91848586-91848692) | |
| 830-991, gnl|rheMac2|chr8 (76125552-76125739) | |
| 830-991, gnl|rheMac2|chr8 (76125558-76125669) | |
| 830-991, gnl|rn3|chr3 (158021859-158021985) | |
| 830-991, gnl|tetNig1|chr6 (1940012-1939845) | |
| 830-991, gnl|tetNig1|chr6 (1940007-1939895) | |
| 830-991, gnl|xenTro1|scaffold_245 (1210622-1210799) | |
| 830-991, gnl|xenTro1|scaffold_245 (1210627-1210739) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 36-530, gnl|bosTau2|chr14 (20919676-20920170) | |
| 36-530, gnl|Hg17|chr8 (74789307-74788501) | |
| 830-991, gnl|bosTau2|chr14 (21002095-21002256) | |
| 830-991, gnl|canFam2|chr29 (25176575-25176766) | |
| 830-991, gnl|canFam2|chr29 (25176580-25176692) | |
| 830-991, gnl|danRer3|chr24 (17225466-17225652) | |
| 830-991, gnl|danRer3|chr24 (17225471-17225583) | |
| 830-991, gnl|dasNov1|scaffold_8505 (43295-43482) | |
| 830-991, gnl|dasNov1|scaffold_8505 (43300-43412) | |
| 830-991, gnl|echTel1|scaffold_102235 (7143-7033) | |
| 830-991, gnl|echTel1|scaffold_218940 (1662-1847) | |
| 830-991, gnl|fr1|chrUn (44810544-44810357) | |
| 830-991, gnl|fr1|chrUn (44810523-44810427) | |
| 830-991, gnl|galGal2|chr2 (117410388-117410575) | |
| 830-991, gnl|hg17|chr8 (74692080-74692267) | |
| 830-991, gnl|Hg17|chr8 (74692242-74692081) | |
| 830-991, gnl|hg17|chrX (89101329-89101428) | |
| 830-991, gnl|loxAfr1|scaffold_31201 (1591-1406) | |
| 830-991, gnl|loxAfr1|scaffold_583 (26551-26632) | |
| 830-991, gnl|mm7|chr1 (16582152-16582339) | |
| 830-991, gnl|mm7|chr1 (16582158-16582269) | |
| 830-991, gnl|Mm7|chr1 (16582314-16582153) | |
| 830-991, gnl|monDom2|scaffold_4 (86878322-86878135) | |
| 830-991, gnl|monDom2|scaffold_4 (86878317-86878205) | |
| 830-991, gnl|oryCun1|scaffold_157186 (15957-16121) | |
| 830-991, gnl|oryCun1|scaffold_189215 (5267-5379) | |
| 830-991, gnl|panTro1|chr7 (76729775-76729962) | |
| 830-991, gnl|panTro1|chrX (91848586-91848692) | |
| 830-991, gnl|rheMac2|chr8 (76125552-76125739) | |
| 830-991, gnl|rheMac2|chr8 (76125558-76125669) | |
| 830-991, gnl|rn3|chr3 (158021859-158021985) | |
| 830-991, gnl|tetNig1|chr6 (1940012-1939845) | |
| 830-991, gnl|tetNig1|chr6 (1940007-1939895) | |
| 830-991, gnl|xenTro1|scaffold_245 (1210622-1210799) | |
| 830-991, gnl|xenTro1|scaffold_245 (1210627-1210739) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nms (0.213858) | |
| tbr (0.154178) | |
| lin (0.145603) | |
| ldo (0.0970026) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.213858) | |
| tbr (0.154178) | |
| lin (0.145603) | |
| ldo (0.0970026) |