Non-Coding RNA Search

Ss1.1-rptbr0101_h13.5

Sequence:


               
               GGAAGGAGAATTTCTCATCTGGGTTTGGAAGCAGAAGAGGAGGCAACAGAACACTAAAGG
AATGTTCCTCAAGCCATGTTGCAGGAGGTAACACATATACAGCATTGCTTCCTGAAATTC
AGACTCTGCCTCTCCAGACAATATCCATTTTATTAAAATGAAATATCAACTCTTCCTAAA
GTTGTCAGGTTAAAAAAGCAAATCTTAATGTGAACTCTATCAATCTTTCTATGAAATGAT
TCAATGTGGGTGTGAAATGGCTCCATGGAGAAATGAAAGCTGCAACTCTTGAAACTTACC
TGCTACCCTTCTGGCCCAGAGCCAGTTCATCACTAAATCTACACTGTGTTGTGTTTCTCT
GTACTCCAGCCAGCCTCCTATTTCAGACTTTGACACAAATGACAGAGTGCTGATAGTGAA
GCCACAAAATGTTAAGATGAGGTCACTTGGAAAGGGGCGGAGGAAGAAAGTACAGGATTT
CTTGGTTAAGTAAGCAGAGACTCAGTTGCTGAAGAACCAATAGGAAGATTCCTTGCAGCC
ACTATATGACAAGCCACCGTCTTCACAATCGCTAAAATGACTTCTAGTCATTTTAGAAGG
ACCACTTTTTGTCTTCTGGTAGGTAGGCAGTTGGGGAATCTGCTTTACTGTTCACTCACT
TATTTCTTTATCCATCTGTCCCCATACTAATTAATTCAAACAGACATTTAAGAGCAATTT
TCACAGAGAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGGAGAATTTCTCATCTGGGTTTGGAAGCAGAAGAGGAGGCAACAGAACACTAAAGG
AATGTTCCTCAAGCCATGTTGCAGGAGGTAACACATATACAGCATTGCTTCCTGAAATTC
AGACTCTGCCTCTCCAGACAATATCCATTTTATTAAAATGAAATATCAACTCTTCCTAAA
GTTGTCAGGTTAAAAAAGCAAATCTTAATGTGAACTCTATCAATCTTTCTATGAAATGAT
TCAATGTGGGTGTGAAATGGCTCCATGGAGAAATGAAAGCTGCAACTCTTGAAACTTACC
TGCTACCCTTCTGGCCCAGAGCCAGTTCATCACTAAATCTACACTGTGTTGTGTTTCTCT
GTACTCCAGCCAGCCTCCTATTTCAGACTTTGACACAAATGACAGAGTGCTGATAGTGAA
GCCACAAAATGTTAAGATGAGGTCACTTGGAAAGGGGCGGAGGAAGAAAGTACAGGATTT
CTTGGTTAAGTAAGCAGAGACTCAGTTGCTGAAGAACCAATAGGAAGATTCCTTGCAGCC
ACTATATGACAAGCCACCGTCTTCACAATCGCTAAAATGACTTCTAGTCATTTTAGAAGG
ACCACTTTTTGTCTTCTGGTAGGTAGGCAGTTGGGGAATCTGCTTTACTGTTCACTCACT
TATTTCTTTATCCATCTGTCCCCATACTAATTAATTCAAACAGACATTTAAGAGCAATTT
TCACAGAGAACT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               28-279, gnl|bosTau2|chr1 (72760554-72760805)
               

               
               28-279, gnl|Hg17|chr3 (154110604-154111250)
               

               
               28-279, gnl|Mm7|chr3 (61229505-61230130)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-279, gnl|bosTau2|chr1 (72760554-72760805)
               

               
               28-279, gnl|Hg17|chr3 (154110604-154111250)
               

               
               28-279, gnl|Mm7|chr3 (61229505-61230130)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               tbr (0.308356)
               

               
               ldo (0.291008)
               

               
               ste (0.270416)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.308356)
               

               
               ldo (0.291008)
               

               
               ste (0.270416)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)

	28-279, gnl\|bosTau2\|chr1 (72760554-72760805)
	28-279, gnl\|Hg17\|chr3 (154110604-154111250)
	28-279, gnl\|Mm7\|chr3 (61229505-61230130)

	tbr (0.308356)
	ldo (0.291008)
	ste (0.270416)
	isp (0.150376)
	bfe (0.149858)