Non-Coding RNA Search

Ss1.1-rptbr0101_h21.5

Sequence:


               
               GGCGGGGCGGGGGCAAGAGTGGCCTCCTTGCCTCTTTGTGCCCTATCGCCGCCCGGACAC
CGCGCAGGCCGCCGGCACCATGAAGATCTGGACTTCCGAGCACGTCTTCGACCACCCATG
GGAAACCGTCACAACAGCTGCAATGCAGAAATACCCCAACCCCATGAACCCCAGTGTGGT
CGGAGTTGACGTCTTGGACAGACACATAGATGCCTCTGGAAAGCTGCACAGCCACAGGCT
CCTCAGCACAGAGTGGGGACTGCCTTCCATAGTGAAATCTATTATTGGTGCAGCAAGAAC
CAAAACATATGTGCAGGAACATTCTGTAGTGGATCCGGTAGCGAAAACAATGGAACTTAA
ATCTACTAATATTTCATTTACAAATATGGTTTCAGTAGATGAGAGGCTTATATACAAACC
ACATCCTCAAGATCCAGAGAAAACTGTGTTGACTCAAGAAGCCATAATTACCGTGAAAGG
CGTCAGTCTGGGCAGTTACCTCGAAGGACTGATGGCAAGTACGATATCTTCCAATGCGAA
TAAGGGCCGAGAAGCAATGGAATGGGTAATACATAAATTAAATGCTGAAATTGAAGAATT
GACGGCTTCAGCCAGAGGGAGCATCCGGACACCGATGGCAGCGGCAGCGTTTGTAGAGAA
ATGATCCTGAACGTGGGCGTGCGCACCCGGTCCCCCAGGTCTCTACACGCTGGCGGTGTA
TTTATTTGCTATTTAAAAAATTCAACTATATTTTAGGTAGGATTTTTTTTTAATAAGCTG
AAGAGAGGCTGTGTGACTGGATCAAAACAAAGGTGCAGGATTTCTAAATAAAAGGGATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGGGCGGGGGCAAGAGTGGCCTCCTTGCCTCTTTGTGCCCTATCGCCGCCCGGACAC
CGCGCAGGCCGCCGGCACCATGAAGATCTGGACTTCCGAGCACGTCTTCGACCACCCATG
GGAAACCGTCACAACAGCTGCAATGCAGAAATACCCCAACCCCATGAACCCCAGTGTGGT
CGGAGTTGACGTCTTGGACAGACACATAGATGCCTCTGGAAAGCTGCACAGCCACAGGCT
CCTCAGCACAGAGTGGGGACTGCCTTCCATAGTGAAATCTATTATTGGTGCAGCAAGAAC
CAAAACATATGTGCAGGAACATTCTGTAGTGGATCCGGTAGCGAAAACAATGGAACTTAA
ATCTACTAATATTTCATTTACAAATATGGTTTCAGTAGATGAGAGGCTTATATACAAACC
ACATCCTCAAGATCCAGAGAAAACTGTGTTGACTCAAGAAGCCATAATTACCGTGAAAGG
CGTCAGTCTGGGCAGTTACCTCGAAGGACTGATGGCAAGTACGATATCTTCCAATGCGAA
TAAGGGCCGAGAAGCAATGGAATGGGTAATACATAAATTAAATGCTGAAATTGAAGAATT
GACGGCTTCAGCCAGAGGGAGCATCCGGACACCGATGGCAGCGGCAGCGTTTGTAGAGAA
ATGATCCTGAACGTGGGCGTGCGCACCCGGTCCCCCAGGTCTCTACACGCTGGCGGTGTA
TTTATTTGCTATTTAAAAAATTCAACTATATTTTAGGTAGGATTTTTTTTTAATAAGCTG
AAGAGAGGCTGTGTGACTGGATCAAAACAAAGGTGCAGGATTTCTAAATAAAAGGGATTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61554294|gb|AAX46534.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61554294|gb|AAX46534.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-554, gnl|bosTau2|chr13 (60426390-60426931)
               

               
               1-554, gnl|Hg17|chr7 (126529547-126530082)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-554, gnl|bosTau2|chr13 (60426390-60426931)
               

               
               1-554, gnl|Hg17|chr7 (126529547-126530082)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               sto (0.359648)
               

               
               tbr (0.308356)
               

               
               cbe (0.239234)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               ldo (0.0970026)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.359648)
               

               
               tbr (0.308356)
               

               
               cbe (0.239234)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               ldo (0.0970026)

	1-554, gnl\|bosTau2\|chr13 (60426390-60426931)
	1-554, gnl\|Hg17\|chr7 (126529547-126530082)

	sto (0.359648)
	tbr (0.308356)
	cbe (0.239234)
	sin (0.174948)
	mcp (0.170648)
	cje (0.165235)
	nco (0.161734)
	fco (0.157208)
	cag (0.151194)
	cst (0.140036)
	ute (0.132784)
	ldo (0.0970026)