Non-Coding RNA Search

Ss1.1-rptbr0101_p7.5

Sequence:


               
               GGGCACAAAGGTAAGGAGAGGGCCCGGCTCTCACATGGGGATCGAGGAGCAGATGGAAGG
GCCAGCAGAGATAGCAGGAGTGTAGACAGGAAGCCGGACAAACCTAAGAGTGAAGACCAG
GAGAGGGACAAAGAGCGGGAGAAAAGTAAGCATAGAGAAGGAGAGAAGGACAGAGACAGG
CACCACAAAGACAGGGACCACGCTGACAGAGCCAAGAGCAAAAGGTAGGGCCGGCCAGCT
GCTGCAGGGGCACGCTCAAGTAACTGGCAAATGCTGTGTCTTTAAAACCTCATGATTGCC
TGTTAGGACCGTGCCATCTCTTCCATCTTTAACATTGGTGGTTTGCAGAACCGTAAATTC
TGTGTGTTGGTGCAGATGCTCTGTGCCAGTGCTCGTCCTCCCCGCTCCATACCAACTCCC
CTAGTTATAGGATTTGAATATTTTTACAAGTTTTACATCGCTGTATATTCAAAGATTCGT
TTTATTAATATGCAATAAAGGCTTAGAAATTTTAGTTTTATTCCTTAATTGGTAAGTATG
GTTAACTATGGAATATATTTACCGCCTCTAGTGAATGTCCTTTATATAATGACTAATTTG
AGAGTAATGTGTACTCTGTAAGTTTGTTTTAAATTGCACTGTTTTTAAAGAAACTGTAGA
GGAACAACAAAAAAGCCAAGCATCTTCGTAATCGGATTATATTAATCATTTAGCTGAGCA
GTTTTTGACCAAGAATCAGAAGCCCAAGGAGTACATTTGCTTTAATCTGCACTCATTGAA
GGCGTTTATTACCGTTACTACAGCTTTGTGGTAGTCCATTATTTTCCTGTTCATTTTTGG
CTCTTCAGAAACTTGAATACTTAAGCTTGTACATGATCTTGTGTTTTGCTATCCTTTTTA
CTGTAAAATGTAAATATTTTAAGGGATATTTTGATTCTAAATATGATAAAAGAATTTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCACAAAGGTAAGGAGAGGGCCCGGCTCTCACATGGGGATCGAGGAGCAGATGGAAGG
GCCAGCAGAGATAGCAGGAGTGTAGACAGGAAGCCGGACAAACCTAAGAGTGAAGACCAG
GAGAGGGACAAAGAGCGGGAGAAAAGTAAGCATAGAGAAGGAGAGAAGGACAGAGACAGG
CACCACAAAGACAGGGACCACGCTGACAGAGCCAAGAGCAAAAGGTAGGGCCGGCCAGCT
GCTGCAGGGGCACGCTCAAGTAACTGGCAAATGCTGTGTCTTTAAAACCTCATGATTGCC
TGTTAGGACCGTGCCATCTCTTCCATCTTTAACATTGGTGGTTTGCAGAACCGTAAATTC
TGTGTGTTGGTGCAGATGCTCTGTGCCAGTGCTCGTCCTCCCCGCTCCATACCAACTCCC
CTAGTTATAGGATTTGAATATTTTTACAAGTTTTACATCGCTGTATATTCAAAGATTCGT
TTTATTAATATGCAATAAAGGCTTAGAAATTTTAGTTTTATTCCTTAATTGGTAAGTATG
GTTAACTATGGAATATATTTACCGCCTCTAGTGAATGTCCTTTATATAATGACTAATTTG
AGAGTAATGTGTACTCTGTAAGTTTGTTTTAAATTGCACTGTTTTTAAAGAAACTGTAGA
GGAACAACAAAAAAGCCAAGCATCTTCGTAATCGGATTATATTAATCATTTAGCTGAGCA
GTTTTTGACCAAGAATCAGAAGCCCAAGGAGTACATTTGCTTTAATCTGCACTCATTGAA
GGCGTTTATTACCGTTACTACAGCTTTGTGGTAGTCCATTATTTTCCTGTTCATTTTTGG
CTCTTCAGAAACTTGAATACTTAAGCTTGTACATGATCTTGTGTTTTGCTATCCTTTTTA
CTGTAAAATGTAAATATTTTAAGGGATATTTTGATTCTAAATATGATAAAAGAATTTCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9CV03_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CV03_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               312-469, - strand, RNAz p=0.957988

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               312-469, - strand, RNAz p=0.957988

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-960, gnl|bosTau2|chr9 (90905-91866)
               

               
               1-960, gnl|Hg17|chr6 (64481336-64482304)
               

               
               1-960, gnl|Mm7|chr1 (31027291-31026373)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-960, gnl|bosTau2|chr9 (90905-91866)
               

               
               1-960, gnl|Hg17|chr6 (64481336-64482304)
               

               
               1-960, gnl|Mm7|chr1 (31027291-31026373)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               tra (0.492368)
               

               
               fat (0.442282)
               

               
               ova (0.387397)
               

               
               sug (0.381874)
               

               
               tbr (0.308356)
               

               
               thg (0.253582)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               pgl (0.118483)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.492368)
               

               
               fat (0.442282)
               

               
               ova (0.387397)
               

               
               sug (0.381874)
               

               
               tbr (0.308356)
               

               
               thg (0.253582)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               pgl (0.118483)

	1-960, gnl\|bosTau2\|chr9 (90905-91866)
	1-960, gnl\|Hg17\|chr6 (64481336-64482304)
	1-960, gnl\|Mm7\|chr1 (31027291-31026373)

	tra (0.492368)
	fat (0.442282)
	ova (0.387397)
	sug (0.381874)
	tbr (0.308356)
	thg (0.253582)
	col (0.195008)
	cmu (0.186393)
	sag (0.182715)
	gul (0.177588)
	fty (0.17584)
	rec (0.17307)
	cje (0.165235)
	isp (0.150376)
	lnt (0.142308)
	ste (0.135208)
	pla (0.133672)
	kid (0.129735)
	pgl (0.118483)