Non-Coding RNA Search

Ss1.1-rptbr0102_m7.5

Sequence:


               
               AAATGAGACAGTTTACACAGTCTGATTGGCTTGTTCTTCCATCTTCATTCTTCTTCACTT
TCATTTTCAGGATCTAAATCAGAATCTCCATTTAATTCCTTTTCGCTTGCGACGTCTCTG
TCCTCACTATTTTCTTCATCTTTTTCTTCAGCATCCTCATCTTCCTCTTCATTCTCTTCA
TCAACATCCTCATCTTTTTCACTTCCTTTCTCTTCCTCATCTTCGTCCCAATTATCATCA
GAATCCTTTTCGGCAATTTCATCATCTGACTCCTCTTCAGAAGATTCTTCTTCATACACC
AACTTTGCCTTCTGCGGGGGACAAGCTGTTCCCTTTGTTTTCTCTGACGCTGTAACTTGT
GTGACTAGAAGAATAAGCTTTCCATGAAGGTGGGAGAGTTTCTGGAAAGTTTTTACTCTG
CTTTCCATTAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGAGACAGTTTACACAGTCTGATTGGCTTGTTCTTCCATCTTCATTCTTCTTCACTT
TCATTTTCAGGATCTAAATCAGAATCTCCATTTAATTCCTTTTCGCTTGCGACGTCTCTG
TCCTCACTATTTTCTTCATCTTTTTCTTCAGCATCCTCATCTTCCTCTTCATTCTCTTCA
TCAACATCCTCATCTTTTTCACTTCCTTTCTCTTCCTCATCTTCGTCCCAATTATCATCA
GAATCCTTTTCGGCAATTTCATCATCTGACTCCTCTTCAGAAGATTCTTCTTCATACACC
AACTTTGCCTTCTGCGGGGGACAAGCTGTTCCCTTTGTTTTCTCTGACGCTGTAACTTGT
GTGACTAGAAGAATAAGCTTTCCATGAAGGTGGGAGAGTTTCTGGAAAGTTTTTACTCTG
CTTTCCATTAAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8TB67_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8TB67_HUMAN

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               4-236, gnl|bosTau2|chr11 (50348900-50348668)
               

               
               4-236, gnl|canFam2|chr17 (25914997-25915188)
               

               
               4-236, gnl|dasNov1|scaffold_16513 (12074-11896)
               

               
               4-236, gnl|echTel1|scaffold_211312 (2443-2263)
               

               
               4-236, gnl|hg17|chr2 (29081073-29081249)
               

               
               4-236, gnl|Hg17|chr2 (29081339-29081117)
               

               
               4-236, gnl|mm7|chr17 (69938812-69938988)
               

               
               4-236, gnl|Mm7|chr17 (69939076-69938850)
               

               
               4-236, gnl|monDom2|scaffold_1 (146684778-146684597)
               

               
               4-236, gnl|oryCun1|scaffold_97715 (9330-9505)
               

               
               4-236, gnl|panTro1|chr12 (30040607-30040783)
               

               
               4-236, gnl|rheMac2|chr13 (28945088-28945267)
               

               
               4-236, gnl|rn3|chr6 (23955458-23955294)
               

               
               4-236, gnl|xenTro1|scaffold_95 (1066108-1066274)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-236, gnl|bosTau2|chr11 (50348900-50348668)
               

               
               4-236, gnl|canFam2|chr17 (25914997-25915188)
               

               
               4-236, gnl|dasNov1|scaffold_16513 (12074-11896)
               

               
               4-236, gnl|echTel1|scaffold_211312 (2443-2263)
               

               
               4-236, gnl|hg17|chr2 (29081073-29081249)
               

               
               4-236, gnl|Hg17|chr2 (29081339-29081117)
               

               
               4-236, gnl|mm7|chr17 (69938812-69938988)
               

               
               4-236, gnl|Mm7|chr17 (69939076-69938850)
               

               
               4-236, gnl|monDom2|scaffold_1 (146684778-146684597)
               

               
               4-236, gnl|oryCun1|scaffold_97715 (9330-9505)
               

               
               4-236, gnl|panTro1|chr12 (30040607-30040783)
               

               
               4-236, gnl|rheMac2|chr13 (28945088-28945267)
               

               
               4-236, gnl|rn3|chr6 (23955458-23955294)
               

               
               4-236, gnl|xenTro1|scaffold_95 (1066108-1066274)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tbr (0.154178)
               

               
               tra (0.123092)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)
               

               
               tra (0.123092)

	4-236, gnl\|bosTau2\|chr11 (50348900-50348668)
	4-236, gnl\|canFam2\|chr17 (25914997-25915188)
	4-236, gnl\|dasNov1\|scaffold_16513 (12074-11896)
	4-236, gnl\|echTel1\|scaffold_211312 (2443-2263)
	4-236, gnl\|hg17\|chr2 (29081073-29081249)
	4-236, gnl\|Hg17\|chr2 (29081339-29081117)
	4-236, gnl\|mm7\|chr17 (69938812-69938988)
	4-236, gnl\|Mm7\|chr17 (69939076-69938850)
	4-236, gnl\|monDom2\|scaffold_1 (146684778-146684597)
	4-236, gnl\|oryCun1\|scaffold_97715 (9330-9505)
	4-236, gnl\|panTro1\|chr12 (30040607-30040783)
	4-236, gnl\|rheMac2\|chr13 (28945088-28945267)
	4-236, gnl\|rn3\|chr6 (23955458-23955294)
	4-236, gnl\|xenTro1\|scaffold_95 (1066108-1066274)