Non-Coding RNA Search

Ss1.1-rptbr0103_h4.5

Sequence:


               
               GCTCCCCTCCCCCCAGCCTTTGCCGGGCCCCTCCCCAGGCTCTTTTGAGATCACCTGCCT
CATCCCCTCTTCCTCAGGCTCTTCCACATCCAGGGTTCCCGTCTGCGTCTTTCTCCTTTC
TGTCTCTCCTTCTCGATCTTTCACTATCTCTTTTACCTCCTTTTTCACCCCTCCACGCCT
CCTCGCTCTTCACCCCTCCTCCATGCCTCTGCCTTTCCAGCCATCACTCCCCATCTTCTC
CTGCCCCCCAATCAATACTTAGTGTTTACTGTGTTCTGCAAATTCTAGAAACAGTCATGG
ATAAAAGAGGGAATTTTATGTAGAAGAACAATTTTAGAGCACTTATTTACTGTATCTTCA
CAGACTCAAAATAGTTATAGAAAGACTTTAATTATCTCAAATTAGCATATACTTTCATTT
TCTATCACACCGTTTATCAGTTAGGTTGGTGGAATGGCATATCTTTTTCATATTTTATTG
TATCATACTTGTGTACCATTTCTAAGGCAGTGCAAATTTGAGACCTAACTTATAGATCAG
AAGTGAGTTCCAAAAATATTTAATAAAATGAAATTTCAACAAGAAATACAGTCCTACAAA
TGGTTTGTGCTGTTCTGCATGAAGTCTTAAATCTCTAATTGTGACTGCTGGTGTCATTCA
GTTACTGAATTTGATAAGAGCAACCTGATTTGTTGTAACAGAATCCTAAGTGCTGTCACA
AAAAAATTTATTTTATTTTTTTAAATAATTCTTCGACGCTTTTTTCTATGGAGAGCTTTT
AAAGACAGATTTTGGCATAATTAAAGATAATTTTGAATCAGAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCCCCTCCCCCCAGCCTTTGCCGGGCCCCTCCCCAGGCTCTTTTGAGATCACCTGCCT
CATCCCCTCTTCCTCAGGCTCTTCCACATCCAGGGTTCCCGTCTGCGTCTTTCTCCTTTC
TGTCTCTCCTTCTCGATCTTTCACTATCTCTTTTACCTCCTTTTTCACCCCTCCACGCCT
CCTCGCTCTTCACCCCTCCTCCATGCCTCTGCCTTTCCAGCCATCACTCCCCATCTTCTC
CTGCCCCCCAATCAATACTTAGTGTTTACTGTGTTCTGCAAATTCTAGAAACAGTCATGG
ATAAAAGAGGGAATTTTATGTAGAAGAACAATTTTAGAGCACTTATTTACTGTATCTTCA
CAGACTCAAAATAGTTATAGAAAGACTTTAATTATCTCAAATTAGCATATACTTTCATTT
TCTATCACACCGTTTATCAGTTAGGTTGGTGGAATGGCATATCTTTTTCATATTTTATTG
TATCATACTTGTGTACCATTTCTAAGGCAGTGCAAATTTGAGACCTAACTTATAGATCAG
AAGTGAGTTCCAAAAATATTTAATAAAATGAAATTTCAACAAGAAATACAGTCCTACAAA
TGGTTTGTGCTGTTCTGCATGAAGTCTTAAATCTCTAATTGTGACTGCTGGTGTCATTCA
GTTACTGAATTTGATAAGAGCAACCTGATTTGTTGTAACAGAATCCTAAGTGCTGTCACA
AAAAAATTTATTTTATTTTTTTAAATAATTCTTCGACGCTTTTTTCTATGGAGAGCTTTT
AAAGACAGATTTTGGCATAATTAAAGATAATTTTGAATCAGAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               640-729, - strand, RNAz p=0.848595

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               640-729, - strand, RNAz p=0.848595

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               66-831, gnl|bosTau2|chr14 (15448725-15449477)
               

               
               66-831, gnl|Hg17|chr8 (62739799-62739022)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               66-831, gnl|bosTau2|chr14 (15448725-15449477)
               

               
               66-831, gnl|Hg17|chr8 (62739799-62739022)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               bfe (2.39772)
               

               
               sme (1.22175)
               

               
               tbr (1.07925)
               

               
               vin (0.665115)
               

               
               ldo (0.582016)
               

               
               isp (0.451128)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               ese (0.126502)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (2.39772)
               

               
               sme (1.22175)
               

               
               tbr (1.07925)
               

               
               vin (0.665115)
               

               
               ldo (0.582016)
               

               
               isp (0.451128)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               ese (0.126502)

	66-831, gnl\|bosTau2\|chr14 (15448725-15449477)
	66-831, gnl\|Hg17\|chr8 (62739799-62739022)

	bfe (2.39772)
	sme (1.22175)
	tbr (1.07925)
	vin (0.665115)
	ldo (0.582016)
	isp (0.451128)
	fce (0.271592)
	ssp (0.271039)
	ste (0.270416)
	ese (0.126502)