Non-Coding RNA Search

Ss1.1-rptbr0103_i4.5

Sequence:


               
               TGGTTAAGCTGAAGACACAATTAGCTTTCTCTTGTCATGGTTTTAAGACTGGTCAGGCTT
------------------------------------------------------------
CGATTCTTGGCCTGATGCAGTGGCTTAAGGATCCAACATTGCTGCAGCTGTGGCGAAGGT
CACAGTGGCAGCTCGGATTTGATCCTCGCCAGGGAACTTCAATATGCCACAGGTGTGGCT
GAAAAATAAACAAACAAAAAGTCAAGCTTTTAAACTATCTGTCTTACGTGGTGAGAGGGC
CTCTTTCTCCAAAGAAATGAATTATCACATTAAGATTTTCTGCTGTGTCTCTCCCAGTGG
AATGGGGGCAGGGTTTGCAGGTTTCTGGGTTGGTGTCTTGCCACATAACGCCACCAGGGC
CATCCGTTGGCTGTGGTGCCCTGGTCTATACCTTTCAGCTCTGAGAGTCTGAATGGAAGA
AGAGGGAGAGGTTAACAGATCAAAATCCTGTGGGGCAACTTCCATGAGCGCTATCGGTGG
CTCGCACTTAACAGCCATAGGAAATAAATATCATGTATAGACGTTTGCCTGGGGGTGGAG
AGTATACAGACAGAAAATCATTAGGTAATTTAAGTGCTAAATTGGATAGAGTTTTTAAGT
ATCAAATCACTTCTATACGGTTTAATTTGTTAAATTCTCACAGGCTGGTGATTTATAACC
TACTCAAAGTTATGAATATTCTTAGTGAACTCAAAGGCTTAGAGCTCTTTGTGAGACACT
TATCAAAATAAGTGTTCTAAGTCAATGCTTCCGTCAAATCTGACGGATCAGAACCACCTG
GGAAATGTGTTTAAAATTTTAAAAATAAAATGTTGTAAGATTTTTGATTCCCAGCCCAGC
CTCCAATCTTTTTTTTTTTTTTTT------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------CAGTCTATTGAATCAAAATGTCCA
GGCGTGAAGCCTGGGAATTTGTTGTGGTTCTTTTGTTTTTCACGTCTTCCCAGGTGATTC
TGATCAGCCCAACGTGGAAACCCTTGCTGGAGAACATGATAAAGATACAGAGACCCAGGC
CTTCCCTTCAGAAGTGACTCTGGGCTTTTGTGGGCTCCGTTAGCTCTCCAGGTGATCCTG
ACACGCACCAGCCTTTGACAAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTTAAGCTGAAGACACAATTAGCTTTCTCTTGTCATGGTTTTAAGACTGGTCAGGCTT
------------------------------------------------------------
CGATTCTTGGCCTGATGCAGTGGCTTAAGGATCCAACATTGCTGCAGCTGTGGCGAAGGT
CACAGTGGCAGCTCGGATTTGATCCTCGCCAGGGAACTTCAATATGCCACAGGTGTGGCT
GAAAAATAAACAAACAAAAAGTCAAGCTTTTAAACTATCTGTCTTACGTGGTGAGAGGGC
CTCTTTCTCCAAAGAAATGAATTATCACATTAAGATTTTCTGCTGTGTCTCTCCCAGTGG
AATGGGGGCAGGGTTTGCAGGTTTCTGGGTTGGTGTCTTGCCACATAACGCCACCAGGGC
CATCCGTTGGCTGTGGTGCCCTGGTCTATACCTTTCAGCTCTGAGAGTCTGAATGGAAGA
AGAGGGAGAGGTTAACAGATCAAAATCCTGTGGGGCAACTTCCATGAGCGCTATCGGTGG
CTCGCACTTAACAGCCATAGGAAATAAATATCATGTATAGACGTTTGCCTGGGGGTGGAG
AGTATACAGACAGAAAATCATTAGGTAATTTAAGTGCTAAATTGGATAGAGTTTTTAAGT
ATCAAATCACTTCTATACGGTTTAATTTGTTAAATTCTCACAGGCTGGTGATTTATAACC
TACTCAAAGTTATGAATATTCTTAGTGAACTCAAAGGCTTAGAGCTCTTTGTGAGACACT
TATCAAAATAAGTGTTCTAAGTCAATGCTTCCGTCAAATCTGACGGATCAGAACCACCTG
GGAAATGTGTTTAAAATTTTAAAAATAAAATGTTGTAAGATTTTTGATTCCCAGCCCAGC
CTCCAATCTTTTTTTTTTTTTTTT------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------CAGTCTATTGAATCAAAATGTCCA
GGCGTGAAGCCTGGGAATTTGTTGTGGTTCTTTTGTTTTTCACGTCTTCCCAGGTGATTC
TGATCAGCCCAACGTGGAAACCCTTGCTGGAGAACATGATAAAGATACAGAGACCCAGGC
CTTCCCTTCAGAAGTGACTCTGGGCTTTTGTGGGCTCCGTTAGCTCTCCAGGTGATCCTG
ACACGCACCAGCCTTTGACAAGCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               652-842, - strand, RNAz p=0.939142

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               652-842, - strand, RNAz p=0.939142

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               197-842, gnl|bosTau2|chr16 (3023285-3022646)
               

               
               197-842, gnl|Hg17|chr1 (202470529-202469612)
               


               
               869-1082, gnl|bosTau2|chr16 (3022647-3022441)
               

               
               869-1082, gnl|Mm7|chr1 (131770591-131770778)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               197-842, gnl|bosTau2|chr16 (3023285-3022646)
               

               
               197-842, gnl|Hg17|chr1 (202470529-202469612)
               


               
               869-1082, gnl|bosTau2|chr16 (3022647-3022441)
               

               
               869-1082, gnl|Mm7|chr1 (131770591-131770778)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tbr (0.154178)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)

	197-842, gnl\|bosTau2\|chr16 (3023285-3022646)
	197-842, gnl\|Hg17\|chr1 (202470529-202469612)

	869-1082, gnl\|bosTau2\|chr16 (3022647-3022441)
	869-1082, gnl\|Mm7\|chr1 (131770591-131770778)