Non-Coding RNA Search

Ss1.1-rptbr0103_p8.5

Sequence:


               
               CAAAAAAAAAAAAAAAAAAAAAAAGGCAAAAAAAAAAAATTTACCTGATGTGATCCTGGT
TGAAATGGATGGTTTTTCACTGAAAGCTTTCTTGCTGTTTAACGATTAAAGTGGGTTGAT
ATGTGGACAGAATCACTTAAGAATGTGGATGCGAAAATCAGTCGGTTTGTTCTACTATCT
AAAGTCATATCGTTTTTTGATCAAACTACGTAAACTGGAAAAACTCACACCACTGATGAG
TTTGATCACTTTAGGGTATACTCGCACTGCTCTGGTGAAATTCGCTGGATTGAATTTTTT
CTTTCTCAAACCTGTGCTCTTTTCCATTTCAGCCTATTTACTACTTTTGTTTGCTTCCTT
TTATATTTTTCTTCATTTTTTTTTTTTAAATCTGCTGGTGTATGAGAAAAGTGAAATTTG
CAGAATGAAACTGAGGCCTCTAAGAGGTGGCTAAACTAGTACTTTTGATCATCTTCAGGG
CCCACAAAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAAAAAAAAAAAAAAAAAAAAAGGCAAAAAAAAAAAATTTACCTGATGTGATCCTGGT
TGAAATGGATGGTTTTTCACTGAAAGCTTTCTTGCTGTTTAACGATTAAAGTGGGTTGAT
ATGTGGACAGAATCACTTAAGAATGTGGATGCGAAAATCAGTCGGTTTGTTCTACTATCT
AAAGTCATATCGTTTTTTGATCAAACTACGTAAACTGGAAAAACTCACACCACTGATGAG
TTTGATCACTTTAGGGTATACTCGCACTGCTCTGGTGAAATTCGCTGGATTGAATTTTTT
CTTTCTCAAACCTGTGCTCTTTTCCATTTCAGCCTATTTACTACTTTTGTTTGCTTCCTT
TTATATTTTTCTTCATTTTTTTTTTTTAAATCTGCTGGTGTATGAGAAAAGTGAAATTTG
CAGAATGAAACTGAGGCCTCTAAGAGGTGGCTAAACTAGTACTTTTGATCATCTTCAGGG
CCCACAAAAAAT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-486, gnl|bosTau2|chr6 (4368338-4367838)
               

               
               7-486, gnl|Hg17|chr4 (114732865-114732327)
               

               
               7-486, gnl|Mm7|chr3 (126681045-126681606)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-486, gnl|bosTau2|chr6 (4368338-4367838)
               

               
               7-486, gnl|Hg17|chr4 (114732865-114732327)
               

               
               7-486, gnl|Mm7|chr3 (126681045-126681606)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               tbr (0.308356)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               ill (0.175593)
               

               
               spl (0.143184)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.308356)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               ill (0.175593)
               

               
               spl (0.143184)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	7-486, gnl\|bosTau2\|chr6 (4368338-4367838)
	7-486, gnl\|Hg17\|chr4 (114732865-114732327)
	7-486, gnl\|Mm7\|chr3 (126681045-126681606)

	tbr (0.308356)
	mas (0.210305)
	hea (0.204499)
	ill (0.175593)
	spl (0.143184)
	jca (0.11396)
	eje (0.0988338)