Non-Coding RNA Search

Ss1.1-rptbr0104_g6.5

Sequence:


               
               CCTGGGGTTTCAGCAGGATATCTTGTTGTGGTTCTGAGGGTTGGGCTCAGCATCTGGGGC
TATAGGGGGAAGTGGAAAGGAAGCCCTCAGAAGACAGGGAAAACCAAACATTCCCCAGAG
CACCCAAGGAAACAGAGGTTGAGCTCCAGAGGCACCTGAACCAAGAAGCCACCCTGCCTG
CCACACTTGCCCCAGAGAGTATGTGATGATGCATCTGCTCCTCCTGTTCTATATAGCAGC
CTTGTGAAAAGAGTAGGGTGTTGTTCAAAGCATGATTTTGGAGCCAGATGACCAAGTTCA
AATTCTACATCTGCTCCTTACGAAGTGTGTGAACTCAGTTAACCTCATCATACTTCAGTT
TTCCCCACCGGTAACATGGGAGTAATAACAGCCAACACATAGGACTGTTATAAGGACTAA
GTGGGGCATATAGAAAGGGCTTCGTACAACATGTGACGAGTTCTCAAAAATGAGAGCTGT
GACTACTTTCACGGTACACAGTACAAGGACCTCTGGCATCGCCGGCCGCACAGAACCCCA
GGTCTTTGACTAAAAGTTGGCAGCGCTCTCAGTGCACTGAATGAATGAACGACTGATTAG
AAAGGAGCTGACGTAAACACAGTGTGGTATCCCAGATGGATCTGGGATTAACAAAGGACA
CAGAATAACTGATGAAATCTGGAAAAAGTCTGTGGTTTAGTTAATAGTGTTACATCAATT
TTAGTGTCTTTGATAAGTTAACTATACTGTGATTATATAAGAAGTTAACATTAGAGAATG
TCGGGTGAAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGGGTTTCAGCAGGATATCTTGTTGTGGTTCTGAGGGTTGGGCTCAGCATCTGGGGC
TATAGGGGGAAGTGGAAAGGAAGCCCTCAGAAGACAGGGAAAACCAAACATTCCCCAGAG
CACCCAAGGAAACAGAGGTTGAGCTCCAGAGGCACCTGAACCAAGAAGCCACCCTGCCTG
CCACACTTGCCCCAGAGAGTATGTGATGATGCATCTGCTCCTCCTGTTCTATATAGCAGC
CTTGTGAAAAGAGTAGGGTGTTGTTCAAAGCATGATTTTGGAGCCAGATGACCAAGTTCA
AATTCTACATCTGCTCCTTACGAAGTGTGTGAACTCAGTTAACCTCATCATACTTCAGTT
TTCCCCACCGGTAACATGGGAGTAATAACAGCCAACACATAGGACTGTTATAAGGACTAA
GTGGGGCATATAGAAAGGGCTTCGTACAACATGTGACGAGTTCTCAAAAATGAGAGCTGT
GACTACTTTCACGGTACACAGTACAAGGACCTCTGGCATCGCCGGCCGCACAGAACCCCA
GGTCTTTGACTAAAAGTTGGCAGCGCTCTCAGTGCACTGAATGAATGAACGACTGATTAG
AAAGGAGCTGACGTAAACACAGTGTGGTATCCCAGATGGATCTGGGATTAACAAAGGACA
CAGAATAACTGATGAAATCTGGAAAAAGTCTGTGGTTTAGTTAATAGTGTTACATCAATT
TTAGTGTCTTTGATAAGTTAACTATACTGTGATTATATAAGAAGTTAACATTAGAGAATG
TCGGGTGAAGAG

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               7-282, gnl|bosTau2|chr28 (24042495-24042753)
               

               
               7-282, gnl|Hg17|chr10 (76522610-76522335)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-282, gnl|bosTau2|chr28 (24042495-24042753)
               

               
               7-282, gnl|Hg17|chr10 (76522610-76522335)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               tbr (0.462535)
               

               
               ste (0.405625)
               

               
               vin (0.332557)
               

               
               isp (0.300752)
               

               
               ldo (0.291008)
               

               
               ssp (0.271039)
               

               
               bfe (0.149858)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.462535)
               

               
               ste (0.405625)
               

               
               vin (0.332557)
               

               
               isp (0.300752)
               

               
               ldo (0.291008)
               

               
               ssp (0.271039)
               

               
               bfe (0.149858)

	7-282, gnl\|bosTau2\|chr28 (24042495-24042753)
	7-282, gnl\|Hg17\|chr10 (76522610-76522335)

	tbr (0.462535)
	ste (0.405625)
	vin (0.332557)
	isp (0.300752)
	ldo (0.291008)
	ssp (0.271039)
	bfe (0.149858)