Non-Coding RNA Search

Ss1.1-rptbr0105_p19.5

Sequence:


               
               GATCCCAAAACAAAAAGCTGTACAACATTAGCAGGAACTGGAGATGCAGGTGACACAATC
GGCTCCAGTTTTACCAAGTCAACTTTTAATGAACCAGGAGGCTTGTGTATTGGAGAGAAT
GGTCAGTTATTATATGTAGCAGATACCAATAACCATCAAATTAAAGTGATGGATTTAGAA
ACAAAAACGGTGTCTGTGCTCCCAGTCTTCAGATCCGAAAGTGCCGTGGTGGACGGCCCA
ATCCTAGCAGAAAAACGGACATTACCCAAACTACCTAAATCTGCTCCGGGCATTAGACTT
TCCCCAGTGGCTGCGTCTCCAGGACAGACTCTTCAGTTCAAGCTAAGATTAGACCTCCCA
TCAGGAACAAAGTTAACTGAAGGAGCACCCAGTTGCTGGTTTCTGTCAGCTGAAGGCAAT
GAATGGCTTCTTCAAGGACAGATACCATCTGGAGAGATAGAGAGCATTTCCAATCAACCA
ACAATCTCACTGCAGATTCCTGGAGACTGTGTATCTCTCGAAGTCGTTCTGTCTATCAGC
GTGTTTCTTTATTACTGTAGCACAGACAGCAGTGCCTGTATGATGAAGGGAATTTTGTTC
AGTCAGCCTTTACAAATAACCAATACACAACAAAGCTACATAGCACCAGTAGAACTCAAG
TACATATTTTAGCAGGCTGGCACGCAGCCCAGTGCCACCTGTTCTCCAGTCCCCACCATC
ACTGTAATTTCCACCTCTGGATACCCAGAAACCCATTGTTTAGTTCTAGTAACTGGTATG
AAAATGCAGCTATGCTCCTTATTTAATTATTTATTATAAAGAATGTCCTTCATTCTTGGC
TGTGTACCAGCTAAATCTTTGACCATGATTTGAACCGTGATTCTGTAATCTATGCTGCTA
TTTGGCACAAGACTTAAGTCCACGTTATAGGACAAAATATTATCGGTTAGGAGATAATTT
GCAGTGAATACTGATAATAATGATACCAAATATTTTAACTCTTTGTACCTTTATTAATAT
CAAGCAGCACATCTGAATATGTAAATTTCACAGTAGCTTTAAACAACAGAACTTAAGCTC
CAGTACGTGTGTTGGTATAAGGACACCTCCCATTCAAGGCATAGATCTGTTTTAAGCCAA
AAAGTCTTTTCATCATAATAGAAATTTAAAGAGTAGCTACGTGATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCCCAAAACAAAAAGCTGTACAACATTAGCAGGAACTGGAGATGCAGGTGACACAATC
GGCTCCAGTTTTACCAAGTCAACTTTTAATGAACCAGGAGGCTTGTGTATTGGAGAGAAT
GGTCAGTTATTATATGTAGCAGATACCAATAACCATCAAATTAAAGTGATGGATTTAGAA
ACAAAAACGGTGTCTGTGCTCCCAGTCTTCAGATCCGAAAGTGCCGTGGTGGACGGCCCA
ATCCTAGCAGAAAAACGGACATTACCCAAACTACCTAAATCTGCTCCGGGCATTAGACTT
TCCCCAGTGGCTGCGTCTCCAGGACAGACTCTTCAGTTCAAGCTAAGATTAGACCTCCCA
TCAGGAACAAAGTTAACTGAAGGAGCACCCAGTTGCTGGTTTCTGTCAGCTGAAGGCAAT
GAATGGCTTCTTCAAGGACAGATACCATCTGGAGAGATAGAGAGCATTTCCAATCAACCA
ACAATCTCACTGCAGATTCCTGGAGACTGTGTATCTCTCGAAGTCGTTCTGTCTATCAGC
GTGTTTCTTTATTACTGTAGCACAGACAGCAGTGCCTGTATGATGAAGGGAATTTTGTTC
AGTCAGCCTTTACAAATAACCAATACACAACAAAGCTACATAGCACCAGTAGAACTCAAG
TACATATTTTAGCAGGCTGGCACGCAGCCCAGTGCCACCTGTTCTCCAGTCCCCACCATC
ACTGTAATTTCCACCTCTGGATACCCAGAAACCCATTGTTTAGTTCTAGTAACTGGTATG
AAAATGCAGCTATGCTCCTTATTTAATTATTTATTATAAAGAATGTCCTTCATTCTTGGC
TGTGTACCAGCTAAATCTTTGACCATGATTTGAACCGTGATTCTGTAATCTATGCTGCTA
TTTGGCACAAGACTTAAGTCCACGTTATAGGACAAAATATTATCGGTTAGGAGATAATTT
GCAGTGAATACTGATAATAATGATACCAAATATTTTAACTCTTTGTACCTTTATTAATAT
CAAGCAGCACATCTGAATATGTAAATTTCACAGTAGCTTTAAACAACAGAACTTAAGCTC
CAGTACGTGTGTTGGTATAAGGACACCTCCCATTCAAGGCATAGATCTGTTTTAAGCCAA
AAAGTCTTTTCATCATAATAGAAATTTAAAGAGTAGCTACGTGATAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21758510|dbj|BAC05316.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21758510|dbj|BAC05316.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, - strand, RNAz p=0.929075

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.929075

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-198, gnl|bosTau2|chr26 (22675547-22675350)
               

               
               1-198, gnl|Hg17|chr10 (115653288-115653485)
               

               
               1-198, gnl|Mm7|chr19 (56509576-56509770)
               


               
               414-1188, gnl|bosTau2|chr26 (22668519-22667731)
               

               
               414-1188, gnl|Hg17|chr10 (115658027-115658825)
               

               
               414-1188, gnl|Mm7|chr19 (56513158-56513887)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-198, gnl|bosTau2|chr26 (22675547-22675350)
               

               
               1-198, gnl|Hg17|chr10 (115653288-115653485)
               

               
               1-198, gnl|Mm7|chr19 (56509576-56509770)
               


               
               414-1188, gnl|bosTau2|chr26 (22668519-22667731)
               

               
               414-1188, gnl|Hg17|chr10 (115658027-115658825)
               

               
               414-1188, gnl|Mm7|chr19 (56513158-56513887)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               tbr (0.154178)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ret (0.128733)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ret (0.128733)

	1-198, gnl\|bosTau2\|chr26 (22675547-22675350)
	1-198, gnl\|Hg17\|chr10 (115653288-115653485)
	1-198, gnl\|Mm7\|chr19 (56509576-56509770)

	414-1188, gnl\|bosTau2\|chr26 (22668519-22667731)
	414-1188, gnl\|Hg17\|chr10 (115658027-115658825)
	414-1188, gnl\|Mm7\|chr19 (56513158-56513887)