Non-Coding RNA Search

Ss1.1-rptbr0106_g8.5

Sequence:


               
               AGTATCTACCCAGAGAGTATAAAACTTGTTAAAATTACATAGAGTTTACCAAAGTAGGAT
TCAAAATATAAACAAATGAAAGATCCAACTCAAAATAATGCTATGTATGTATTGGTTTCT
AGAAATTTCCATTTTATTTGAGTACACTATCGTATTTATTGGTAGTTATTGTTGCAATTA
GAACTATCATTAAAGTAGTGAATCATTATATTTAAAGAGTATTCAGGAATTTTTTTAAAG
TTCTCTCATAAAAATCATAATCTGCCTGAAATTGATTCCTCTTGTCCAGTGCAGGGCCGC
TATTACAAAAGAAAAGATACCTGTTTCAAGTATTCAGTTAATTCTGGTTTGCCTTACATA
TAGTTCAGTGATAGGTTCTTCCTAAATCATGAAGCCACTTGGCTAACCCCCAAGTGGCTC
TCCTTTTTAATATGTGAGCAACCTAAGGGTAAGCAGTTCATTGATTGCTCTCTTTTTAAA
TATGTGAGCAAACTAAGGGTAAGCAGTTCATTTATTTGTTTAGGCACAGAAACGTGAGTC
TTATTTCTCTCTCTAGGGCCCACATGTTTTCACTTTCTCCTTTGATAGCACACTAGACCA
GACTAGCACCAGGCTTCCACCTGGACCACTGCAGTTAAGTTCTTCTACACCTATTTTTGC
TTTTTATCTTCATCCATGTGGGTCACTGCAGCCAGAGTGATTTACTAAAATTTTAAATCT
AGCCATGAGTTTCCCTTCTAAAACTTTAGGGGGAAAAAAGAAGACTAATTTTTAGAGCTG
TTTTTGCTTTAAAGCAAAACTGAGCAGAAAGTACAGTTTCCATATATCTCCTGTTCCTCT
ATTCTCCCCCCATCAATATCCCACACCAGAATGGTACATTAATTATAACTGATGGACCCA
CATTGATAAATCATTATCACCCAAATCCATAATTTACATTAGGGTTCACTCATTGTACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTATCTACCCAGAGAGTATAAAACTTGTTAAAATTACATAGAGTTTACCAAAGTAGGAT
TCAAAATATAAACAAATGAAAGATCCAACTCAAAATAATGCTATGTATGTATTGGTTTCT
AGAAATTTCCATTTTATTTGAGTACACTATCGTATTTATTGGTAGTTATTGTTGCAATTA
GAACTATCATTAAAGTAGTGAATCATTATATTTAAAGAGTATTCAGGAATTTTTTTAAAG
TTCTCTCATAAAAATCATAATCTGCCTGAAATTGATTCCTCTTGTCCAGTGCAGGGCCGC
TATTACAAAAGAAAAGATACCTGTTTCAAGTATTCAGTTAATTCTGGTTTGCCTTACATA
TAGTTCAGTGATAGGTTCTTCCTAAATCATGAAGCCACTTGGCTAACCCCCAAGTGGCTC
TCCTTTTTAATATGTGAGCAACCTAAGGGTAAGCAGTTCATTGATTGCTCTCTTTTTAAA
TATGTGAGCAAACTAAGGGTAAGCAGTTCATTTATTTGTTTAGGCACAGAAACGTGAGTC
TTATTTCTCTCTCTAGGGCCCACATGTTTTCACTTTCTCCTTTGATAGCACACTAGACCA
GACTAGCACCAGGCTTCCACCTGGACCACTGCAGTTAAGTTCTTCTACACCTATTTTTGC
TTTTTATCTTCATCCATGTGGGTCACTGCAGCCAGAGTGATTTACTAAAATTTTAAATCT
AGCCATGAGTTTCCCTTCTAAAACTTTAGGGGGAAAAAAGAAGACTAATTTTTAGAGCTG
TTTTTGCTTTAAAGCAAAACTGAGCAGAAAGTACAGTTTCCATATATCTCCTGTTCCTCT
ATTCTCCCCCCATCAATATCCCACACCAGAATGGTACATTAATTATAACTGATGGACCCA
CATTGATAAATCATTATCACCCAAATCCATAATTTACATTAGGGTTCACTCATTGTACAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               587-704, - strand, RNAz p=0.779656

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               587-704, - strand, RNAz p=0.779656

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               468-959, gnl|bosTau2|chr2 (14459157-14459643)
               

               
               468-959, gnl|Hg17|chr2 (175119425-175119912)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               468-959, gnl|bosTau2|chr2 (14459157-14459643)
               

               
               468-959, gnl|Hg17|chr2 (175119425-175119912)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               tbr (0.308356)
               

               
               csp (0.161186)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.308356)
               

               
               csp (0.161186)
               

               
               cty (0.10408)

	468-959, gnl\|bosTau2\|chr2 (14459157-14459643)
	468-959, gnl\|Hg17\|chr2 (175119425-175119912)