Non-Coding RNA Search

Ss1.1-rptbr0107_m21.5

Sequence:


               
               TGGAAGAGAACTTGGAGGAGGACAGCACTCTGAGACTTCTAGACGCTTCAAAGCAGGGCA
TGGCATGGACACGTACATGCCATGGGGAAAATGAGGCAGGCAGGACCAAATTGCTAGTCA
TTGAGTCATTCATCCAGTAAAACGTTAAGACTGGTGATGATTTAATAACCCTGAAAATAA
CATGTGTTAGGGAGGAGGGGGAGGAACGAGAACACCCATTGCTGGTGGGAGTGTAGATGG
GAGCATTCTCTTTGGACAAAAGTGGGTGAGCATCTGGTCAAGTTGAAAATGTTCAAACTC
TATGGCCCACCCCAGAAACCCTCACACCTGCACCCCAGGAGACACACATGCCAATGCTGA
CAGGAGTGTTGTCTGCAGTCGCCAAATCTGGAGAAAGCAGCCCTCCCTCAACAAGGGGAT
CCATAATTAACTGTGCAGTGTCTCTGCACCTAGAAACCAAAACTAGAATAAAAGCTTCAG
CTACACGGGTGATCTAACAGACATAATGGGGAGCAAAAGGAGCTGGACACACAGAGTGGT
GTGATTCCCACTCGTGTTCAATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAAGAGAACTTGGAGGAGGACAGCACTCTGAGACTTCTAGACGCTTCAAAGCAGGGCA
TGGCATGGACACGTACATGCCATGGGGAAAATGAGGCAGGCAGGACCAAATTGCTAGTCA
TTGAGTCATTCATCCAGTAAAACGTTAAGACTGGTGATGATTTAATAACCCTGAAAATAA
CATGTGTTAGGGAGGAGGGGGAGGAACGAGAACACCCATTGCTGGTGGGAGTGTAGATGG
GAGCATTCTCTTTGGACAAAAGTGGGTGAGCATCTGGTCAAGTTGAAAATGTTCAAACTC
TATGGCCCACCCCAGAAACCCTCACACCTGCACCCCAGGAGACACACATGCCAATGCTGA
CAGGAGTGTTGTCTGCAGTCGCCAAATCTGGAGAAAGCAGCCCTCCCTCAACAAGGGGAT
CCATAATTAACTGTGCAGTGTCTCTGCACCTAGAAACCAAAACTAGAATAAAAGCTTCAG
CTACACGGGTGATCTAACAGACATAATGGGGAGCAAAAGGAGCTGGACACACAGAGTGGT
GTGATTCCCACTCGTGTTCAATTC

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-155, gnl|bosTau2|chr16 (2341969-2342123)
               

               
               1-155, gnl|Hg17|chr1 (199877341-199877521)
               


               
               219-564, gnl|bosTau2|chr16 (2342123-2342447)
               

               
               219-564, gnl|canFam2|chr7 (3035543-3035140)
               

               
               219-564, gnl|hg17|chr1 (199877361-199877801)
               

               
               219-564, gnl|Hg17|chr1 (199877521-199877909)
               

               
               219-564, gnl|mm7|chr1 (134082183-134081754)
               

               
               219-564, gnl|Mm7|chr1 (134082043-134081663)
               

               
               219-564, gnl|panTro1|chr1 (182731898-182732338)
               

               
               219-564, gnl|rheMac2|chr1 (167258198-167257759)
               

               
               219-564, gnl|rn3|chr13 (47164106-47163592)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-155, gnl|bosTau2|chr16 (2341969-2342123)
               

               
               1-155, gnl|Hg17|chr1 (199877341-199877521)
               


               
               219-564, gnl|bosTau2|chr16 (2342123-2342447)
               

               
               219-564, gnl|canFam2|chr7 (3035543-3035140)
               

               
               219-564, gnl|hg17|chr1 (199877361-199877801)
               

               
               219-564, gnl|Hg17|chr1 (199877521-199877909)
               

               
               219-564, gnl|mm7|chr1 (134082183-134081754)
               

               
               219-564, gnl|Mm7|chr1 (134082043-134081663)
               

               
               219-564, gnl|panTro1|chr1 (182731898-182732338)
               

               
               219-564, gnl|rheMac2|chr1 (167258198-167257759)
               

               
               219-564, gnl|rn3|chr13 (47164106-47163592)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               tbr (0.308356)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.308356)

	1-155, gnl\|bosTau2\|chr16 (2341969-2342123)
	1-155, gnl\|Hg17\|chr1 (199877341-199877521)

	219-564, gnl\|bosTau2\|chr16 (2342123-2342447)
	219-564, gnl\|canFam2\|chr7 (3035543-3035140)
	219-564, gnl\|hg17\|chr1 (199877361-199877801)
	219-564, gnl\|Hg17\|chr1 (199877521-199877909)
	219-564, gnl\|mm7\|chr1 (134082183-134081754)
	219-564, gnl\|Mm7\|chr1 (134082043-134081663)
	219-564, gnl\|panTro1\|chr1 (182731898-182732338)
	219-564, gnl\|rheMac2\|chr1 (167258198-167257759)
	219-564, gnl\|rn3\|chr13 (47164106-47163592)