Non-Coding RNA Search

Ss1.1-rptbr0110_j15.5

Sequence:


               
               ATTTTCTCAGCTTCCTGCCCTTTATAAATGACCTAAAAGTTTTCAGGTTGCTTTACTATG
TTTTATAGAGAAAATTCTCTCTTACAGTGGTATCGAGCATTTGAGATTTATGAAGGCATT
AGGACAGATATCTCAGGAATGTAAACGGTCAGAAAAGTCTGCTTTCTGTGATGAACAAAT
ACAATGGCTTCCATGGCTGACCTTGGTGCTTAAACCAGGAGATTCCAATCTAGTCCTAGA
GTTCTGTCCCTCTGAGAGGTCCAACTCTATGTGACTAACAAACTGGATGTATACTTTGAG
CCTTATTTAATTCACAGATAAGTTGACTTAATTTTTGTTTCAGTTAATGAAAATAGTCCT
CTTTTCACCTCCGGATTACTTACATTTTGCTGGTCTCTCCAAGTGACCATTGGTGGAGAC
CAATTAATGAAGGGATGAAATTCACTTTCTTGGAACTGTGGTATTCTGCAGAGCCACACT
TAACCACTTTTTCTAGTGAAGAATCTACAGAATGATAGCTAAATATGGATGGCCAAGAAG
AATTTATATCTACAGTGCGCTTTACGTATTTTTGACACTGCTGTATTCTGTGTGATTGAG
TGACTTGTAACTGGTTCCAATGTGACTGAATGTGCTCAAAGAACTCTAGTAACCTAAGTC
AACTTAATTTTCTTAAGCTTTGTATTACTATCAGTCTCACATTTACCACTTTGATTCCAG
TCTTTTAACTGTTCATAACAGGGCATACCAAGGGTTGGGATGAGAGCATAATTCCTACCT
CTTAAGGCACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTCTCAGCTTCCTGCCCTTTATAAATGACCTAAAAGTTTTCAGGTTGCTTTACTATG
TTTTATAGAGAAAATTCTCTCTTACAGTGGTATCGAGCATTTGAGATTTATGAAGGCATT
AGGACAGATATCTCAGGAATGTAAACGGTCAGAAAAGTCTGCTTTCTGTGATGAACAAAT
ACAATGGCTTCCATGGCTGACCTTGGTGCTTAAACCAGGAGATTCCAATCTAGTCCTAGA
GTTCTGTCCCTCTGAGAGGTCCAACTCTATGTGACTAACAAACTGGATGTATACTTTGAG
CCTTATTTAATTCACAGATAAGTTGACTTAATTTTTGTTTCAGTTAATGAAAATAGTCCT
CTTTTCACCTCCGGATTACTTACATTTTGCTGGTCTCTCCAAGTGACCATTGGTGGAGAC
CAATTAATGAAGGGATGAAATTCACTTTCTTGGAACTGTGGTATTCTGCAGAGCCACACT
TAACCACTTTTTCTAGTGAAGAATCTACAGAATGATAGCTAAATATGGATGGCCAAGAAG
AATTTATATCTACAGTGCGCTTTACGTATTTTTGACACTGCTGTATTCTGTGTGATTGAG
TGACTTGTAACTGGTTCCAATGTGACTGAATGTGCTCAAAGAACTCTAGTAACCTAAGTC
AACTTAATTTTCTTAAGCTTTGTATTACTATCAGTCTCACATTTACCACTTTGATTCCAG
TCTTTTAACTGTTCATAACAGGGCATACCAAGGGTTGGGATGAGAGCATAATTCCTACCT
CTTAAGGCACTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               312-442, - strand, RNAz p=0.929381

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               312-442, - strand, RNAz p=0.929381

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-442, gnl|bosTau2|chrX (39148222-39148668)
               

               
               2-442, gnl|Hg17|chrX (19929525-19929076)
               

               
               2-442, gnl|Mm7|chrX (154140777-154141211)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-442, gnl|bosTau2|chrX (39148222-39148668)
               

               
               2-442, gnl|Hg17|chrX (19929525-19929076)
               

               
               2-442, gnl|Mm7|chrX (154140777-154141211)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ste (0.405625)
               

               
               tbr (0.308356)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               sug (0.127291)
               

               
               cbl (0.114797)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.405625)
               

               
               tbr (0.308356)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               sug (0.127291)
               

               
               cbl (0.114797)

	2-442, gnl\|bosTau2\|chrX (39148222-39148668)
	2-442, gnl\|Hg17\|chrX (19929525-19929076)
	2-442, gnl\|Mm7\|chrX (154140777-154141211)

	ste (0.405625)
	tbr (0.308356)
	fty (0.17584)
	mcp (0.170648)
	sug (0.127291)
	cbl (0.114797)