Non-Coding RNA Search

Ss1.1-rptbr0112_e3.5

Sequence:


               
               GTCCAATCAAGGTGAAGAAGAAACAACAAGAATTTCATATTTTACTTTTATTGGGACTCC
GGTCCAGGCAACAAATATGAATGACTTCAAACGACTTTTTTAATCCAACTCAAATGAACT
AAAAACAGAAGATTTTTTAAAATGAAGTAATATAAAGATTGACCTTATCTCACTCCACTC
CCCTCCTTGCTTCTCTGCTCATCTTGCACCTGTCTGCTCTCACCCTTCCCATGTTCTCGC
CATTGTTGGGGCAAGATTTCTACAGCTTCTATCATCTGGATCAGCCTTCTTATTACCTAG
ATTTCCTCAACCATTTCTTCAGATCTCATTCTAGTCATGTTTTTCATTTAGCCTTTTATT
TTGTTTTGCTTCTTGCAACTAGGTGCTCCATTGGCAATGGTAATTTTATTGCCATACCAG
GTTCCTCACCTGACTTTTTTTTTTTTTTTAACTTTCTCCTGTCTCATATTTAATTTTGTA
CTGCATTTTGAGAAATAATATTGCAAAAAAACCTTACATTGTTGTAAATGTTTTTAGATT
TATCTGGTTGTTAGATGATGTTTTAATCTGATCTCAAGTTTAAATTTTATTTTTTAGAAA
TTATACAAGCATTTTGAAAATCAGCTTCATCAGGTTCTTTTATATTAGTACTAGTGTAAC
ATATTGATTAGGCTGAAGTTGAGAGATTTGTTTTCTTTTCTTATTGAAACTGTAGCCCCA
AAATCTTTTTCCTGATTAATTGTAGGCATGTCCCCTGCTTTGCCAACCCAAGTGAGTTCA
AGGCCAGTTGAAAGACTTATGGACTGAATGTTAGGCTGGGTTAAAATATTAACATAGAAG
ATTAATGGACTCTTTACCGAATAAATATTTTTGACACCTAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCAATCAAGGTGAAGAAGAAACAACAAGAATTTCATATTTTACTTTTATTGGGACTCC
GGTCCAGGCAACAAATATGAATGACTTCAAACGACTTTTTTAATCCAACTCAAATGAACT
AAAAACAGAAGATTTTTTAAAATGAAGTAATATAAAGATTGACCTTATCTCACTCCACTC
CCCTCCTTGCTTCTCTGCTCATCTTGCACCTGTCTGCTCTCACCCTTCCCATGTTCTCGC
CATTGTTGGGGCAAGATTTCTACAGCTTCTATCATCTGGATCAGCCTTCTTATTACCTAG
ATTTCCTCAACCATTTCTTCAGATCTCATTCTAGTCATGTTTTTCATTTAGCCTTTTATT
TTGTTTTGCTTCTTGCAACTAGGTGCTCCATTGGCAATGGTAATTTTATTGCCATACCAG
GTTCCTCACCTGACTTTTTTTTTTTTTTTAACTTTCTCCTGTCTCATATTTAATTTTGTA
CTGCATTTTGAGAAATAATATTGCAAAAAAACCTTACATTGTTGTAAATGTTTTTAGATT
TATCTGGTTGTTAGATGATGTTTTAATCTGATCTCAAGTTTAAATTTTATTTTTTAGAAA
TTATACAAGCATTTTGAAAATCAGCTTCATCAGGTTCTTTTATATTAGTACTAGTGTAAC
ATATTGATTAGGCTGAAGTTGAGAGATTTGTTTTCTTTTCTTATTGAAACTGTAGCCCCA
AAATCTTTTTCCTGATTAATTGTAGGCATGTCCCCTGCTTTGCCAACCCAAGTGAGTTCA
AGGCCAGTTGAAAGACTTATGGACTGAATGTTAGGCTGGGTTAAAATATTAACATAGAAG
ATTAATGGACTCTTTACCGAATAAATATTTTTGACACCTAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               95-214, - strand, RNAz p=0.793233

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               95-214, - strand, RNAz p=0.793233

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               124-242, - strand, RNAmicro p=0.979106

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               124-242, - strand, RNAmicro p=0.979106

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               95-346, gnl|bosTau2|chr24 (41450606-41450351)
               

               
               95-346, gnl|Hg17|chr18 (52423613-52423361)
               

               
               95-346, gnl|Mm7|chr18 (64055849-64055623)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               95-346, gnl|bosTau2|chr24 (41450606-41450351)
               

               
               95-346, gnl|Hg17|chr18 (52423613-52423361)
               

               
               95-346, gnl|Mm7|chr18 (64055849-64055623)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hea (0.204499)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)

	95-346, gnl\|bosTau2\|chr24 (41450606-41450351)
	95-346, gnl\|Hg17\|chr18 (52423613-52423361)
	95-346, gnl\|Mm7\|chr18 (64055849-64055623)