Ss1.1-rptbr0112_o5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGAGGCGAAAAAAAATTATAAGAGACCATGGATTAATCAACCTTAGAAAGTTTCAGTTA ATGGAACGGCGATATCCCAAGGAAGTCCAAGACCTTTATGAAACAATGAGGCGATTTGCA AGGATAGTGGGACCAGTGGAGCATGACAAGTTCATTGAAAGCCATGCATTGGAATTTGAA CTCCGCAGAGAAATCAAGAGGCTCCAGGAATACAGGACAGCAGGCATTACCAATTTTTGT AGTGCCAGAACCTATGATCACCTCAAGAAGACCCGAGAAGAGGAGCGCCTCAAACGTACC ATGCTCTCCGAAGTCCTCCAGTACATCCAGGACAGCAGTGCCTGCCAGCAGTGGCTCCGC CGGCAGGCTGACATTGATTCTGGCCTGAGTCCTTCTGTTCCAATGGCTTCGAATTCAGGT AGACGAAGTGCACCGCCCTTGAACCTCACTGGCCTCCCTGGCACAGAGAAATTGAATGAA TCTTCTTGTAAATTGACAGAGCAGAGCAGTCCTAATTGGGTAGCTAGCAGAATTCAGAAC ATATTAGCAGTTCTCAGAAACAGCATGGTACTGACAGTTTTGAGAAACATAACTGGCCTC CTAGAATCCCACTTTGCTGCTTTGATTCTCCCCTCCCCATCCATGACATGTGGAAACGCC CAGGCCAGGGATCCAACCCGCCCGCAGTGCATTTGCGGCCTGGGCCGCAGGTGCGGCAAT GCCGGATCCTTAACTTGCTGGGCCGCAAGGGAACTAATTTTTTAATTAGTAAATTCTCTC CCCATGCCTTCTTTCTCCCTCTATATTTATTGGTATGATTTTCATCGGAGAATCATGTTT CTGTTCCTTCCCCATGAGTGGCCTCCGAGATGGGCCAGGCCAAGAGGTCGTCTTCTTGGC AAATCCGAGCGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGAGGCGAAAAAAAATTATAAGAGACCATGGATTAATCAACCTTAGAAAGTTTCAGTTA ATGGAACGGCGATATCCCAAGGAAGTCCAAGACCTTTATGAAACAATGAGGCGATTTGCA AGGATAGTGGGACCAGTGGAGCATGACAAGTTCATTGAAAGCCATGCATTGGAATTTGAA CTCCGCAGAGAAATCAAGAGGCTCCAGGAATACAGGACAGCAGGCATTACCAATTTTTGT AGTGCCAGAACCTATGATCACCTCAAGAAGACCCGAGAAGAGGAGCGCCTCAAACGTACC ATGCTCTCCGAAGTCCTCCAGTACATCCAGGACAGCAGTGCCTGCCAGCAGTGGCTCCGC CGGCAGGCTGACATTGATTCTGGCCTGAGTCCTTCTGTTCCAATGGCTTCGAATTCAGGT AGACGAAGTGCACCGCCCTTGAACCTCACTGGCCTCCCTGGCACAGAGAAATTGAATGAA TCTTCTTGTAAATTGACAGAGCAGAGCAGTCCTAATTGGGTAGCTAGCAGAATTCAGAAC ATATTAGCAGTTCTCAGAAACAGCATGGTACTGACAGTTTTGAGAAACATAACTGGCCTC CTAGAATCCCACTTTGCTGCTTTGATTCTCCCCTCCCCATCCATGACATGTGGAAACGCC CAGGCCAGGGATCCAACCCGCCCGCAGTGCATTTGCGGCCTGGGCCGCAGGTGCGGCAAT GCCGGATCCTTAACTTGCTGGGCCGCAAGGGAACTAATTTTTTAATTAGTAAATTCTCTC CCCATGCCTTCTTTCTCCCTCTATATTTATTGGTATGATTTTCATCGGAGAATCATGTTT CTGTTCCTTCCCCATGAGTGGCCTCCGAGATGGGCCAGGCCAAGAGGTCGTCTTCTTGGC AAATCCGAGCGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 59-169, gnl|bosTau2|chr19 (7106259-7106149) | |
| 59-169, gnl|canFam2|chr9 (40551636-40551792) | |
| 59-169, gnl|danRer3|chr15 (14856092-14855942) | |
| 59-169, gnl|echTel1|scaffold_207060 (128-4) | |
| 59-169, gnl|fr1|chrUn (15631879-15632029) | |
| 59-169, gnl|galGal2|chr19 (8118467-8118607) | |
| 59-169, gnl|hg17|chr17 (32899618-32899774) | |
| 59-169, gnl|Hg17|chr17 (32899648-32899758) | |
| 59-169, gnl|mm7|chr11 (84160594-84160443) | |
| 59-169, gnl|Mm7|chr11 (84160567-84160457) | |
| 59-169, gnl|monDom2|scaffold_135 (981274-981106) | |
| 59-169, gnl|oryCun1|scaffold_204781 (27918-28074) | |
| 59-169, gnl|panTro1|chr19 (36079459-36079615) | |
| 59-169, gnl|rheMac2|chr16 (47469503-47469659) | |
| 59-169, gnl|rn3|chr10 (72391869-72391718) | |
| 59-169, gnl|tetNig1|chr16 (3921861-3921722) | |
| 59-169, gnl|xenTro1|scaffold_580 (153085-152943) | |
| 242-374, gnl|bosTau2|chr19 (7102631-7102499) | |
| 242-374, gnl|Hg17|chr17 (32904617-32904749) | |
| 242-374, gnl|Mm7|chr11 (84155679-84155547) | |
| 501-624, gnl|bosTau2|chr19 (7102410-7102286) | |
| 501-624, gnl|canFam2|chr9 (40556949-40557107) | |
| 501-624, gnl|danRer3|chr4 (13869159-13869325) | |
| 501-624, gnl|echTel1|scaffold_94461 (5742-5588) | |
| 501-624, gnl|hg17|chr17 (32904825-32904983) | |
| 501-624, gnl|Hg17|chr17 (32904831-32904956) | |
| 501-624, gnl|loxAfr1|scaffold_117 (236626-236785) | |
| 501-624, gnl|mm7|chr11 (84155462-84155333) | |
| 501-624, gnl|Mm7|chr11 (84155460-84155357) | |
| 501-624, gnl|monDom2|scaffold_135 (977454-977309) | |
| 501-624, gnl|oryCun1|scaffold_204781 (31789-31910) | |
| 501-624, gnl|panTro1|chr19 (36084679-36084837) | |
| 501-624, gnl|rheMac2|chr16 (47474607-47474767) | |
| 501-624, gnl|rn3|chr10 (72386978-72386848) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 59-169, gnl|bosTau2|chr19 (7106259-7106149) | |
| 59-169, gnl|canFam2|chr9 (40551636-40551792) | |
| 59-169, gnl|danRer3|chr15 (14856092-14855942) | |
| 59-169, gnl|echTel1|scaffold_207060 (128-4) | |
| 59-169, gnl|fr1|chrUn (15631879-15632029) | |
| 59-169, gnl|galGal2|chr19 (8118467-8118607) | |
| 59-169, gnl|hg17|chr17 (32899618-32899774) | |
| 59-169, gnl|Hg17|chr17 (32899648-32899758) | |
| 59-169, gnl|mm7|chr11 (84160594-84160443) | |
| 59-169, gnl|Mm7|chr11 (84160567-84160457) | |
| 59-169, gnl|monDom2|scaffold_135 (981274-981106) | |
| 59-169, gnl|oryCun1|scaffold_204781 (27918-28074) | |
| 59-169, gnl|panTro1|chr19 (36079459-36079615) | |
| 59-169, gnl|rheMac2|chr16 (47469503-47469659) | |
| 59-169, gnl|rn3|chr10 (72391869-72391718) | |
| 59-169, gnl|tetNig1|chr16 (3921861-3921722) | |
| 59-169, gnl|xenTro1|scaffold_580 (153085-152943) | |
| 242-374, gnl|bosTau2|chr19 (7102631-7102499) | |
| 242-374, gnl|Hg17|chr17 (32904617-32904749) | |
| 242-374, gnl|Mm7|chr11 (84155679-84155547) | |
| 501-624, gnl|bosTau2|chr19 (7102410-7102286) | |
| 501-624, gnl|canFam2|chr9 (40556949-40557107) | |
| 501-624, gnl|danRer3|chr4 (13869159-13869325) | |
| 501-624, gnl|echTel1|scaffold_94461 (5742-5588) | |
| 501-624, gnl|hg17|chr17 (32904825-32904983) | |
| 501-624, gnl|Hg17|chr17 (32904831-32904956) | |
| 501-624, gnl|loxAfr1|scaffold_117 (236626-236785) | |
| 501-624, gnl|mm7|chr11 (84155462-84155333) | |
| 501-624, gnl|Mm7|chr11 (84155460-84155357) | |
| 501-624, gnl|monDom2|scaffold_135 (977454-977309) | |
| 501-624, gnl|oryCun1|scaffold_204781 (31789-31910) | |
| 501-624, gnl|panTro1|chr19 (36084679-36084837) | |
| 501-624, gnl|rheMac2|chr16 (47474607-47474767) | |
| 501-624, gnl|rn3|chr10 (72386978-72386848) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| eye (0.170503) | |
| tbr (0.154178) | |
| pty (0.142714) | |
| jca (0.11396) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eye (0.170503) | |
| tbr (0.154178) | |
| pty (0.142714) | |
| jca (0.11396) |