Non-Coding RNA Search

Ss1.1-rptbr0112_p23.5

Sequence:


               
               AGGGTGACATACATAAAATATATTTAAATATATAGTTTGGGGGAAGTAAGGTTTAATTTT
ACCTTCAGGTGTGAGATGGAGAGGAAGTTTTTGTTTTTCCCCACTTAGATGTAGGTCAAT
TAAAATAATTGGTTTAAAAACTGCTAAATGCTTTATACATAATGTAGCTTATAAATAGGA
ATGTTAAGATATACATGTGAGAAATTTTTAAAGATAACTATTGTGCATGCCTGATGCTTA
ATGGAACACTTCGTAGCATCAAGTATTGTTTGCAGCAGTCTCCATAATTATATGCAGTCC
CTTCCAATGCTGTATCAAAGTAAATGGAAAAAAAAATTCAAATTGGCTTTTTGGGAGCTT
ATTTGATATGCATCAAGTGGCGTTTTGTTCCTGTGTTTAATGGTGATCCATGTACAGCTG
TGCATATATTTTCATCACTAATTCTAGCATCAGTATTAAAAGAATGGCTATGACTATATT
TGATTTTTCACATAGATTTTAATACAAAACATGATCAGTTTCCCTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGTGACATACATAAAATATATTTAAATATATAGTTTGGGGGAAGTAAGGTTTAATTTT
ACCTTCAGGTGTGAGATGGAGAGGAAGTTTTTGTTTTTCCCCACTTAGATGTAGGTCAAT
TAAAATAATTGGTTTAAAAACTGCTAAATGCTTTATACATAATGTAGCTTATAAATAGGA
ATGTTAAGATATACATGTGAGAAATTTTTAAAGATAACTATTGTGCATGCCTGATGCTTA
ATGGAACACTTCGTAGCATCAAGTATTGTTTGCAGCAGTCTCCATAATTATATGCAGTCC
CTTCCAATGCTGTATCAAAGTAAATGGAAAAAAAAATTCAAATTGGCTTTTTGGGAGCTT
ATTTGATATGCATCAAGTGGCGTTTTGTTCCTGTGTTTAATGGTGATCCATGTACAGCTG
TGCATATATTTTCATCACTAATTCTAGCATCAGTATTAAAAGAATGGCTATGACTATATT
TGATTTTTCACATAGATTTTAATACAAAACATGATCAGTTTCCCTGTG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-524, gnl|bosTau2|chr14 (43331148-43330628)
               

               
               1-524, gnl|Hg17|chr8 (95006022-95006515)
               

               
               1-524, gnl|Mm7|chr4 (11886794-11886316)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-524, gnl|bosTau2|chr14 (43331148-43330628)
               

               
               1-524, gnl|Hg17|chr8 (95006022-95006515)
               

               
               1-524, gnl|Mm7|chr4 (11886794-11886316)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ste (0.270416)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               sug (0.127291)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.270416)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               sug (0.127291)
               

               
               ldo (0.0970026)

	1-524, gnl\|bosTau2\|chr14 (43331148-43330628)
	1-524, gnl\|Hg17\|chr8 (95006022-95006515)
	1-524, gnl\|Mm7\|chr4 (11886794-11886316)

	ste (0.270416)
	tbr (0.154178)
	spl (0.143184)
	sug (0.127291)
	ldo (0.0970026)