Ss1.1-rptbr0112_p24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACGAGGCAGAGGAAATCCTCGATTGAACTTTGATTATGCATATGGTTATCGAGAACAT GGTGAAAGGACTGATCAACCATTTCAAACAGAACTTAATACCAGTATGATGTATTACTAT GATGATGGTACGGGCATTCAGGTGTATCCTGTGGAAGAAGCATTGCTTAAAGAGTATATC AAGCGTCAAATTGAATATTATTTCAGTATAGAAAACTTGGAACGGGACTTCTTTCTGAGA AGAAAGATGGATAAGCAAGGTTTCTTACCTATTTCCCTGATTGCTGGTTTTCACCGTGTT CAAGCTCTCACTACAAACCTTAATCTCATTTTAGAGGCCCTGAAAGATAGCACAGAAGTG GAAATCGTGGACGAGAAAATGAGAAAAAAAATAGAACCAGAAAAATGGCCAATTCCGGGT CCTCCTCCACGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACGAGGCAGAGGAAATCCTCGATTGAACTTTGATTATGCATATGGTTATCGAGAACAT GGTGAAAGGACTGATCAACCATTTCAAACAGAACTTAATACCAGTATGATGTATTACTAT GATGATGGTACGGGCATTCAGGTGTATCCTGTGGAAGAAGCATTGCTTAAAGAGTATATC AAGCGTCAAATTGAATATTATTTCAGTATAGAAAACTTGGAACGGGACTTCTTTCTGAGA AGAAAGATGGATAAGCAAGGTTTCTTACCTATTTCCCTGATTGCTGGTTTTCACCGTGTT CAAGCTCTCACTACAAACCTTAATCTCATTTTAGAGGCCCTGAAAGATAGCACAGAAGTG GAAATCGTGGACGAGAAAATGAGAAAAAAAATAGAACCAGAAAAATGGCCAATTCCGGGT CCTCCTCCACGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 192-337, - strand, RNAz p=0.996803 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 192-337, - strand, RNAz p=0.996803 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 21-191, gnl|bosTau2|chr17 (18757679-18757849) | |
| 21-191, gnl|canFam2|chr19 (15887799-15887636) | |
| 21-191, gnl|danRer3|chr17 (32113173-32113325) | |
| 21-191, gnl|dasNov1|scaffold_159960 (147-296) | |
| 21-191, gnl|echTel1|scaffold_299539 (3872-4037) | |
| 21-191, gnl|galGal2|chr4 (34888147-34888313) | |
| 21-191, gnl|Hg17|chr4 (129370102-129370272) | |
| 21-191, gnl|hg17|chrX (133063827-133063993) | |
| 21-191, gnl|loxAfr1|scaffold_35102 (14423-14586) | |
| 21-191, gnl|Mm7|chr3 (40744837-40745007) | |
| 21-191, gnl|mm7|chr8 (108351662-108351498) | |
| 21-191, gnl|monDom2|scaffold_34 (5050151-5050319) | |
| 21-191, gnl|oryCun1|scaffold_194970 (7113-7276) | |
| 21-191, gnl|panTro1|chrX (137669268-137669434) | |
| 21-191, gnl|rheMac2|chrX (132421951-132422121) | |
| 21-191, gnl|rn3|chr2 (127862686-127862849) | |
| 21-191, gnl|xenTro1|scaffold_426 (258617-258462) | |
| 192-337, gnl|bosTau2|chr17 (18761540-18761685) | |
| 192-337, gnl|canFam2|chr19 (15884316-15884176) | |
| 192-337, gnl|canFam2|chr19 (15884318-15884188) | |
| 192-337, gnl|danRer3|chr17 (32117445-32117587) | |
| 192-337, gnl|danRer3|chr17 (32117443-32117579) | |
| 192-337, gnl|dasNov1|scaffold_159960 (297-442) | |
| 192-337, gnl|dasNov1|scaffold_159960 (294-423) | |
| 192-337, gnl|echTel1|scaffold_299539 (4038-4185) | |
| 192-337, gnl|echTel1|scaffold_299539 (4036-4166) | |
| 192-337, gnl|fr1|chrUn (163260111-163260247) | |
| 192-337, gnl|galGal2|chr4 (34892035-34892180) | |
| 192-337, gnl|galGal2|chr4 (34892033-34892163) | |
| 192-337, gnl|hg17|chr4 (64045121-64045251) | |
| 192-337, gnl|Hg17|chr4 (129376946-129377091) | |
| 192-337, gnl|hg17|chrX (133063994-133064137) | |
| 192-337, gnl|loxAfr1|scaffold_223057 (125-267) | |
| 192-337, gnl|loxAfr1|scaffold_223057 (120-250) | |
| 192-337, gnl|Mm7|chr3 (40746752-40746897) | |
| 192-337, gnl|mm7|chr8 (108351496-108351358) | |
| 192-337, gnl|mm7|chr8 (108351495-108351377) | |
| 192-337, gnl|monDom2|scaffold_137 (1464956-1465083) | |
| 192-337, gnl|monDom2|scaffold_34 (5050320-5050456) | |
| 192-337, gnl|oryCun1|scaffold_194970 (11881-12026) | |
| 192-337, gnl|oryCun1|scaffold_194970 (11876-12007) | |
| 192-337, gnl|panTro1|chr3 (82635833-82635703) | |
| 192-337, gnl|panTro1|chrX (137669435-137669578) | |
| 192-337, gnl|rheMac2|chr5 (66060096-66059966) | |
| 192-337, gnl|rheMac2|chrX (132422122-132422266) | |
| 192-337, gnl|rn3|chr2 (127866275-127866415) | |
| 192-337, gnl|rn3|chr2 (127866273-127866403) | |
| 192-337, gnl|tetNig1|chr7 (7774283-7774419) | |
| 192-337, gnl|xenTro1|scaffold_426 (258375-258232) | |
| 192-337, gnl|xenTro1|scaffold_426 (258377-258248) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 21-191, gnl|bosTau2|chr17 (18757679-18757849) | |
| 21-191, gnl|canFam2|chr19 (15887799-15887636) | |
| 21-191, gnl|danRer3|chr17 (32113173-32113325) | |
| 21-191, gnl|dasNov1|scaffold_159960 (147-296) | |
| 21-191, gnl|echTel1|scaffold_299539 (3872-4037) | |
| 21-191, gnl|galGal2|chr4 (34888147-34888313) | |
| 21-191, gnl|Hg17|chr4 (129370102-129370272) | |
| 21-191, gnl|hg17|chrX (133063827-133063993) | |
| 21-191, gnl|loxAfr1|scaffold_35102 (14423-14586) | |
| 21-191, gnl|Mm7|chr3 (40744837-40745007) | |
| 21-191, gnl|mm7|chr8 (108351662-108351498) | |
| 21-191, gnl|monDom2|scaffold_34 (5050151-5050319) | |
| 21-191, gnl|oryCun1|scaffold_194970 (7113-7276) | |
| 21-191, gnl|panTro1|chrX (137669268-137669434) | |
| 21-191, gnl|rheMac2|chrX (132421951-132422121) | |
| 21-191, gnl|rn3|chr2 (127862686-127862849) | |
| 21-191, gnl|xenTro1|scaffold_426 (258617-258462) | |
| 192-337, gnl|bosTau2|chr17 (18761540-18761685) | |
| 192-337, gnl|canFam2|chr19 (15884316-15884176) | |
| 192-337, gnl|canFam2|chr19 (15884318-15884188) | |
| 192-337, gnl|danRer3|chr17 (32117445-32117587) | |
| 192-337, gnl|danRer3|chr17 (32117443-32117579) | |
| 192-337, gnl|dasNov1|scaffold_159960 (297-442) | |
| 192-337, gnl|dasNov1|scaffold_159960 (294-423) | |
| 192-337, gnl|echTel1|scaffold_299539 (4038-4185) | |
| 192-337, gnl|echTel1|scaffold_299539 (4036-4166) | |
| 192-337, gnl|fr1|chrUn (163260111-163260247) | |
| 192-337, gnl|galGal2|chr4 (34892035-34892180) | |
| 192-337, gnl|galGal2|chr4 (34892033-34892163) | |
| 192-337, gnl|hg17|chr4 (64045121-64045251) | |
| 192-337, gnl|Hg17|chr4 (129376946-129377091) | |
| 192-337, gnl|hg17|chrX (133063994-133064137) | |
| 192-337, gnl|loxAfr1|scaffold_223057 (125-267) | |
| 192-337, gnl|loxAfr1|scaffold_223057 (120-250) | |
| 192-337, gnl|Mm7|chr3 (40746752-40746897) | |
| 192-337, gnl|mm7|chr8 (108351496-108351358) | |
| 192-337, gnl|mm7|chr8 (108351495-108351377) | |
| 192-337, gnl|monDom2|scaffold_137 (1464956-1465083) | |
| 192-337, gnl|monDom2|scaffold_34 (5050320-5050456) | |
| 192-337, gnl|oryCun1|scaffold_194970 (11881-12026) | |
| 192-337, gnl|oryCun1|scaffold_194970 (11876-12007) | |
| 192-337, gnl|panTro1|chr3 (82635833-82635703) | |
| 192-337, gnl|panTro1|chrX (137669435-137669578) | |
| 192-337, gnl|rheMac2|chr5 (66060096-66059966) | |
| 192-337, gnl|rheMac2|chrX (132422122-132422266) | |
| 192-337, gnl|rn3|chr2 (127866275-127866415) | |
| 192-337, gnl|rn3|chr2 (127866273-127866403) | |
| 192-337, gnl|tetNig1|chr7 (7774283-7774419) | |
| 192-337, gnl|xenTro1|scaffold_426 (258375-258232) | |
| 192-337, gnl|xenTro1|scaffold_426 (258377-258248) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (0.154178) | |
| nmm (0.132802) |