Non-Coding RNA Search

Ss1.1-rptbr0113_f19.5

Sequence:


               
               AGATGTGGCTTTCCTAAGAAGTGTCTTATTCTCTCTTCCATCATATTTTTCAGCCCTGCA
AAGGGTGGTATTTCTTTTGGAGTCAGCATATATGAGTATCAATTTCATTCATAGCCTAAT
AAGTTCAGGACTCAAAAATTTCTTGGCAGCAAGTGGCAGGGACTCATTAGTCACTGGAAT
TAACAGTAAGTTAATTATGCAGTTGATTGATAATTATACTAAAGCACATTGAACTTCTAA
GAGAAAGGTGCTACATAAGCACGCTGTCTTTCTGGATGGAGGCTTGCATTTTCAATAACT
TATCATTCCAGCTGTGTTGGACCTGGGTCCAAAACATTTTGTAACAATATATATATATAT
ATTTTTTTTTTATCTAGGAAAAAGACCCAAGTAAATTTAACTTCTTGCTTTCTCACACTT
CTGAATTTTCTCCTATCTAATCCATTCTAGTTTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATGTGGCTTTCCTAAGAAGTGTCTTATTCTCTCTTCCATCATATTTTTCAGCCCTGCA
AAGGGTGGTATTTCTTTTGGAGTCAGCATATATGAGTATCAATTTCATTCATAGCCTAAT
AAGTTCAGGACTCAAAAATTTCTTGGCAGCAAGTGGCAGGGACTCATTAGTCACTGGAAT
TAACAGTAAGTTAATTATGCAGTTGATTGATAATTATACTAAAGCACATTGAACTTCTAA
GAGAAAGGTGCTACATAAGCACGCTGTCTTTCTGGATGGAGGCTTGCATTTTCAATAACT
TATCATTCCAGCTGTGTTGGACCTGGGTCCAAAACATTTTGTAACAATATATATATATAT
ATTTTTTTTTTATCTAGGAAAAAGACCCAAGTAAATTTAACTTCTTGCTTTCTCACACTT
CTGAATTTTCTCCTATCTAATCCATTCTAGTTTTTA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-191, gnl|bosTau2|chr5 (48526215-48526027)
               

               
               2-191, gnl|Hg17|chr12 (30674429-30674245)
               

               
               2-191, gnl|Mm7|chr6 (148850473-148850292)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-191, gnl|bosTau2|chr5 (48526215-48526027)
               

               
               2-191, gnl|Hg17|chr12 (30674429-30674245)
               

               
               2-191, gnl|Mm7|chr6 (148850473-148850292)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)

	2-191, gnl\|bosTau2\|chr5 (48526215-48526027)
	2-191, gnl\|Hg17\|chr12 (30674429-30674245)
	2-191, gnl\|Mm7\|chr6 (148850473-148850292)