Non-Coding RNA Search

Ss1.1-rptbr0114_c24.5

Sequence:


               
               GAAAGGATATCGCAGAAATGAGGAGGAATGAAATATCTCTTGGAAAATAACTATGAGAAA
AAAGTACAAAGAATTAAGATCATTCAGCTCTGGAGGGGAGAAAGCTGTTGAGATAGCTTA
AGAAGTCTCGAGTTATTAGCCGAATCTTTCATTGAAGAGCTCAAAGAAGAAGGTAATATG
ACGAACTGTTTTCCATCCCCAGCAGGGACAGAATAAGAGGGAATAAAGTTTTTTTTAAAT
AAGGTTAAAAATTTTATTATTAAGGGGTATACGAAATAGCCTTTTAAAGTTCCTTCCAAT
CCTTTTTGAAATCTCAGATTGAAACAAAGATGTTGTGACAAAGCGCACTGAAAAGTAACA
TTTGAGTTTGCCTCCTTATCTAGAAGAAAACTTTAGCTCGCAAGATAGTTTTTGTATATG
TTGAGTAGCAGATGCCTGAGCGCAGTCTTTATTCACTGTGTAAAAGACCTGCTTAGTTTA
ACCTGGCAAGGTGAGACTTGATCACAGTTTTGTTCATCTGGAAGAATGGCTAGCGTTATA
GGATATCCGAGGGTTTTGTTTTACATATAAATTATTGTTCTTTGGATGTAATAACTTCAG
CACTTAAAAAGGTTCTAAGAGGAGCTCCCTTTGTGGCACAGCGGAAACAAATCCGACTAG
GAACCATGAGGTTGCAGGTTCAATCCCTGGCCTCGCTCAGTGGGTTAAGGATCCGATGGT
GCCGTGACCCGTGGTGTAGGCCGGAGACACGGCTGGGATCTGGTATTGCTGTGGCTGTGG
CGTAGGCCGACAGCAACAGCTCCGATTAGACCCCTAGAGTCTGGGAACCCCTATATGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGGATATCGCAGAAATGAGGAGGAATGAAATATCTCTTGGAAAATAACTATGAGAAA
AAAGTACAAAGAATTAAGATCATTCAGCTCTGGAGGGGAGAAAGCTGTTGAGATAGCTTA
AGAAGTCTCGAGTTATTAGCCGAATCTTTCATTGAAGAGCTCAAAGAAGAAGGTAATATG
ACGAACTGTTTTCCATCCCCAGCAGGGACAGAATAAGAGGGAATAAAGTTTTTTTTAAAT
AAGGTTAAAAATTTTATTATTAAGGGGTATACGAAATAGCCTTTTAAAGTTCCTTCCAAT
CCTTTTTGAAATCTCAGATTGAAACAAAGATGTTGTGACAAAGCGCACTGAAAAGTAACA
TTTGAGTTTGCCTCCTTATCTAGAAGAAAACTTTAGCTCGCAAGATAGTTTTTGTATATG
TTGAGTAGCAGATGCCTGAGCGCAGTCTTTATTCACTGTGTAAAAGACCTGCTTAGTTTA
ACCTGGCAAGGTGAGACTTGATCACAGTTTTGTTCATCTGGAAGAATGGCTAGCGTTATA
GGATATCCGAGGGTTTTGTTTTACATATAAATTATTGTTCTTTGGATGTAATAACTTCAG
CACTTAAAAAGGTTCTAAGAGGAGCTCCCTTTGTGGCACAGCGGAAACAAATCCGACTAG
GAACCATGAGGTTGCAGGTTCAATCCCTGGCCTCGCTCAGTGGGTTAAGGATCCGATGGT
GCCGTGACCCGTGGTGTAGGCCGGAGACACGGCTGGGATCTGGTATTGCTGTGGCTGTGG
CGTAGGCCGACAGCAACAGCTCCGATTAGACCCCTAGAGTCTGGGAACCCCTATATGCCT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               4-621, gnl|bosTau2|chr15 (34211366-34210753)
               

               
               4-621, gnl|Hg17|chr11 (73722205-73721493)
               

               
               4-621, gnl|Mm7|chr7 (96321597-96322426)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-621, gnl|bosTau2|chr15 (34211366-34210753)
               

               
               4-621, gnl|Hg17|chr11 (73722205-73721493)
               

               
               4-621, gnl|Mm7|chr7 (96321597-96322426)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ste (0.270416)
               

               
               fcc (0.197785)
               

               
               tbr (0.154178)
               

               
               ctl (0.153069)
               

               
               nmm (0.132802)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.270416)
               

               
               fcc (0.197785)
               

               
               tbr (0.154178)
               

               
               ctl (0.153069)
               

               
               nmm (0.132802)
               

               
               ldo (0.0970026)

	4-621, gnl\|bosTau2\|chr15 (34211366-34210753)
	4-621, gnl\|Hg17\|chr11 (73722205-73721493)
	4-621, gnl\|Mm7\|chr7 (96321597-96322426)

	ste (0.270416)
	fcc (0.197785)
	tbr (0.154178)
	ctl (0.153069)
	nmm (0.132802)
	ldo (0.0970026)