Non-Coding RNA Search

Ss1.1-rptbr0115_c13.5

Sequence:


               
               ATTTTTTTAATGAAGCGTCCTGAATACTAGGGAGCTACTTAGGACATTTGAGAATCGAAG
TTATGCAAACAAATTATCTTAGAGGGACTAATATGGCAACGAAAGCTACTTTGGAAGAAG
ATGAGAATGGAGATATAGAAAGCTATTATAGTTCAGGTCAATAAAGAGGAAAAGTTGGAT
CCAAGAGATATTGTGGAGGTAGAACTGTTCATTAAATAGGTAGTTGCCAAGTGTCTACTG
TGTATCATGATTACATACTTAGAGAGAATATTTAAAAAATGAATCACGTCTGCTATAAAT
AAGTACTGTCAGTATTTATCCCTATCTGATATATTGGATATCAAATATTCTTTGCAAATA
TTGTCTATTGCACTTATCTATATTTTCTGTGAACTCAGATGTATGCTGTTTAACATCAAT
GTATATATGTAGGTGCATGCATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTTTTAATGAAGCGTCCTGAATACTAGGGAGCTACTTAGGACATTTGAGAATCGAAG
TTATGCAAACAAATTATCTTAGAGGGACTAATATGGCAACGAAAGCTACTTTGGAAGAAG
ATGAGAATGGAGATATAGAAAGCTATTATAGTTCAGGTCAATAAAGAGGAAAAGTTGGAT
CCAAGAGATATTGTGGAGGTAGAACTGTTCATTAAATAGGTAGTTGCCAAGTGTCTACTG
TGTATCATGATTACATACTTAGAGAGAATATTTAAAAAATGAATCACGTCTGCTATAAAT
AAGTACTGTCAGTATTTATCCCTATCTGATATATTGGATATCAAATATTCTTTGCAAATA
TTGTCTATTGCACTTATCTATATTTTCTGTGAACTCAGATGTATGCTGTTTAACATCAAT
GTATATATGTAGGTGCATGCATTT

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               104-262, gnl|bosTau2|chr27 (1350031-1350192)
               

               
               104-262, gnl|canFam2|chr11 (60092667-60092826)
               

               
               104-262, gnl|dasNov1|scaffold_67157 (10374-10239)
               

               
               104-262, gnl|hg17|chr9 (99972200-99972354)
               

               
               104-262, gnl|Hg17|chr9 (99972202-99972353)
               

               
               104-262, gnl|mm7|chr4 (48325818-48325967)
               

               
               104-262, gnl|panTro1|chr11 (84205995-84206149)
               

               
               104-262, gnl|rheMac2|chr15 (36088819-36088665)
               

               
               104-262, gnl|rn3|chr5 (64997290-64997440)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               104-262, gnl|bosTau2|chr27 (1350031-1350192)
               

               
               104-262, gnl|canFam2|chr11 (60092667-60092826)
               

               
               104-262, gnl|dasNov1|scaffold_67157 (10374-10239)
               

               
               104-262, gnl|hg17|chr9 (99972200-99972354)
               

               
               104-262, gnl|Hg17|chr9 (99972202-99972353)
               

               
               104-262, gnl|mm7|chr4 (48325818-48325967)
               

               
               104-262, gnl|panTro1|chr11 (84205995-84206149)
               

               
               104-262, gnl|rheMac2|chr15 (36088819-36088665)
               

               
               104-262, gnl|rn3|chr5 (64997290-64997440)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cbe (0.239234)
               

               
               tbr (0.154178)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               tbr (0.154178)

	104-262, gnl\|bosTau2\|chr27 (1350031-1350192)
	104-262, gnl\|canFam2\|chr11 (60092667-60092826)
	104-262, gnl\|dasNov1\|scaffold_67157 (10374-10239)
	104-262, gnl\|hg17\|chr9 (99972200-99972354)
	104-262, gnl\|Hg17\|chr9 (99972202-99972353)
	104-262, gnl\|mm7\|chr4 (48325818-48325967)
	104-262, gnl\|panTro1\|chr11 (84205995-84206149)
	104-262, gnl\|rheMac2\|chr15 (36088819-36088665)
	104-262, gnl\|rn3\|chr5 (64997290-64997440)