Non-Coding RNA Search

Ss1.1-rptbr0116_o1.5

Sequence:


               
               GAGGAAATAGTGCTTCTGAAAAATGGGAGATAATGTTTAATGAAGAGCTTGGGAATCCTT
TTATCATAATTCACAGTATCTCATTGTTGAAAGATGAAGAACATTCAATAGCTACCCTAC
TTCTTCGAATAGAGAAAGAGGAATTGGATATGAAAGGAAGTGGTTTCTATGTTTCCTTGG
AGTGGATCACTATTAGTAAGAAAAGTAAAGATAATAAAAAATATGAAATTACTAAGCGTG
ATATTCTCCGTGGAAAATCAGTGCCTCATTATGCTGCTTTTGAGCCTGATGGGAATGGTC
TAATGATTGTCTCCTACAAGTCCTTCACATTTGTTCAGCTTGGTCAGGATCTTGAAGAAA
GTCAGGATGAAAACATGTCAGAGAAAATCAAAGCACCTCTGTATTACTGGCAACAAACTG
AAGATGATTTGACAGTAACAATACAGCTTCCAGAAGATAGTACCAAGGAAGATATTCAAG
TACAGTTTTTGCCTGATCATGTCAACATTGTACTGAAGGGTCAGAGATTTTTAGAAGGAA
ATCTGTATTCATCTATTGATCATGAAAGCAGTACATGGATAATTAAAGAGAATAACAGCT
TGGAGATTTGTTTGATTAAGAAGAATGAGGGACTGACATGGCCAGAGCTAGTAGTCGGTG
ATAAACAAGGGGAATTTATAAGAGACTCGGCCCAGTATGCTGCAATAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGAAATAGTGCTTCTGAAAAATGGGAGATAATGTTTAATGAAGAGCTTGGGAATCCTT
TTATCATAATTCACAGTATCTCATTGTTGAAAGATGAAGAACATTCAATAGCTACCCTAC
TTCTTCGAATAGAGAAAGAGGAATTGGATATGAAAGGAAGTGGTTTCTATGTTTCCTTGG
AGTGGATCACTATTAGTAAGAAAAGTAAAGATAATAAAAAATATGAAATTACTAAGCGTG
ATATTCTCCGTGGAAAATCAGTGCCTCATTATGCTGCTTTTGAGCCTGATGGGAATGGTC
TAATGATTGTCTCCTACAAGTCCTTCACATTTGTTCAGCTTGGTCAGGATCTTGAAGAAA
GTCAGGATGAAAACATGTCAGAGAAAATCAAAGCACCTCTGTATTACTGGCAACAAACTG
AAGATGATTTGACAGTAACAATACAGCTTCCAGAAGATAGTACCAAGGAAGATATTCAAG
TACAGTTTTTGCCTGATCATGTCAACATTGTACTGAAGGGTCAGAGATTTTTAGAAGGAA
ATCTGTATTCATCTATTGATCATGAAAGCAGTACATGGATAATTAAAGAGAATAACAGCT
TGGAGATTTGTTTGATTAAGAAGAATGAGGGACTGACATGGCCAGAGCTAGTAGTCGGTG
ATAAACAAGGGGAATTTATAAGAGACTCGGCCCAGTATGCTGCAATAG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               28-219, gnl|bosTau2|chr14 (34022147-34022338)
               

               
               28-219, gnl|Hg17|chr8 (110374931-110374741)
               

               
               28-219, gnl|Mm7|chr15 (44450477-44450285)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-219, gnl|bosTau2|chr14 (34022147-34022338)
               

               
               28-219, gnl|Hg17|chr8 (110374931-110374741)
               

               
               28-219, gnl|Mm7|chr15 (44450477-44450285)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tbr (0.154178)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)
               

               
               ldo (0.0970026)

	28-219, gnl\|bosTau2\|chr14 (34022147-34022338)
	28-219, gnl\|Hg17\|chr8 (110374931-110374741)
	28-219, gnl\|Mm7\|chr15 (44450477-44450285)