Non-Coding RNA Search

Ss1.1-rptbr0122_l4.5

Sequence:


               
               GAAGTTCCTTTGCCTTGGGAGCGGCGTGGCTGTGGAATTTCCAGTGACACACACTCTCCG
TGGTGCAAGATTTTAAATCACCTTCCTTTTTGGCTGCAAGATTTTGAGGCCATCTGATTG
CATTTTCTCATTTTACAGATGAGGAAATGAGGCCCAGAAGTGTGAAATCAATTTCCTTAC
AGTTCTCCCAGCTGACTAGGGACAGAAGAGAGTGCAGATCTATCCCACACTGCCTTCTGA
CCTTTCTTGAGGCTGGGCTCATGTTGAAATTTAAGATGCCAAGTGTTTTTGCCTGCACCT
TTCCAATTGGGAAAACTACCAGTGTTTAAAAGTCAGATTTATTTTTATATGGCTCACTGT
GTGTACTGGACTGTAGGGCACCATATTTAACCTCATTAAGAAAACATCGATTATAAAACA
TGCCTTTGCTTTATATACCACTAAGAAAGGCAGTGAAGGACTTGACACTTTTGACAGTTA
ATGGCCAAACTCATTGGAACTGGAGATGCTAATGTGTGGGAAAAAAAATATATTCTAGAA
TCAATGAAATGTGGCCTTTTGACTATCCCTAAAGAGTTTTAGACTTACAAAGCCAGTACT
CAGTCTTGGGTCTTCACAGAGGATTTTTCCCTTGCTAGATCCTGGAATTTTTACCCTTCC
ACAAATAGTTGGGTCTTCCTTTGGTCACCCGTAAAACAGAAGGGAGATTATGTACCTTGG
TCTAATGTTAGCACCCTGAGTAAACGATGCATTTTAGTTAGTGACAAGTGAACACAGCAC
TGGCATTTATTTTGGAAGTTGAAAAATTATGGTGCCATGAAGAGCAAATGCTTTTCTTTT
CTGCTCTGTGCAGTAGCTTTCCCGGAACTATGGACAAAGTGATGGAAGGGAGATGGAGTA
TTTCCCCTTTTCATGTAAAGCGCTGCTTAAAGTGGCAGCTTCTTGTCATGATGGGAAACT
TGCATCATTTGGATATCCTTTTGAGAAACTGAAGTTTGCAAAGGACCATTGACTTACCCA
AGTTGAACAGGCTCAGGAAATTTTCCTTTGAACTCACAACATTGTCTGTTTGAATGTTTT
ATTTATTGTTGGCGGTTCCTCAGGGATTTCAGTTTTCTCTCTCTTGGTCAGTGTAATTGA
TATAAAAGTGTATTAAGAATTGAAAAAATATATTTTTATTTTATTGCTCCAGTTTGATAT
GAAGTAAAATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGTTCCTTTGCCTTGGGAGCGGCGTGGCTGTGGAATTTCCAGTGACACACACTCTCCG
TGGTGCAAGATTTTAAATCACCTTCCTTTTTGGCTGCAAGATTTTGAGGCCATCTGATTG
CATTTTCTCATTTTACAGATGAGGAAATGAGGCCCAGAAGTGTGAAATCAATTTCCTTAC
AGTTCTCCCAGCTGACTAGGGACAGAAGAGAGTGCAGATCTATCCCACACTGCCTTCTGA
CCTTTCTTGAGGCTGGGCTCATGTTGAAATTTAAGATGCCAAGTGTTTTTGCCTGCACCT
TTCCAATTGGGAAAACTACCAGTGTTTAAAAGTCAGATTTATTTTTATATGGCTCACTGT
GTGTACTGGACTGTAGGGCACCATATTTAACCTCATTAAGAAAACATCGATTATAAAACA
TGCCTTTGCTTTATATACCACTAAGAAAGGCAGTGAAGGACTTGACACTTTTGACAGTTA
ATGGCCAAACTCATTGGAACTGGAGATGCTAATGTGTGGGAAAAAAAATATATTCTAGAA
TCAATGAAATGTGGCCTTTTGACTATCCCTAAAGAGTTTTAGACTTACAAAGCCAGTACT
CAGTCTTGGGTCTTCACAGAGGATTTTTCCCTTGCTAGATCCTGGAATTTTTACCCTTCC
ACAAATAGTTGGGTCTTCCTTTGGTCACCCGTAAAACAGAAGGGAGATTATGTACCTTGG
TCTAATGTTAGCACCCTGAGTAAACGATGCATTTTAGTTAGTGACAAGTGAACACAGCAC
TGGCATTTATTTTGGAAGTTGAAAAATTATGGTGCCATGAAGAGCAAATGCTTTTCTTTT
CTGCTCTGTGCAGTAGCTTTCCCGGAACTATGGACAAAGTGATGGAAGGGAGATGGAGTA
TTTCCCCTTTTCATGTAAAGCGCTGCTTAAAGTGGCAGCTTCTTGTCATGATGGGAAACT
TGCATCATTTGGATATCCTTTTGAGAAACTGAAGTTTGCAAAGGACCATTGACTTACCCA
AGTTGAACAGGCTCAGGAAATTTTCCTTTGAACTCACAACATTGTCTGTTTGAATGTTTT
ATTTATTGTTGGCGGTTCCTCAGGGATTTCAGTTTTCTCTCTCTTGGTCAGTGTAATTGA
TATAAAAGTGTATTAAGAATTGAAAAAATATATTTTTATTTTATTGCTCCAGTTTGATAT
GAAGTAAAATAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               77-196, - strand, RNAz p=0.90499
               

               
               532-647, - strand, RNAz p=0.579463
               

               
               831-1029, - strand, RNAz p=0.983826

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-196, - strand, RNAz p=0.90499
               

               
               532-647, - strand, RNAz p=0.579463
               

               
               831-1029, - strand, RNAz p=0.983826

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1212, gnl|bosTau2|chr24 (33057042-33055840)
               

               
               1-1212, gnl|Hg17|chr18 (41819061-41817520)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1212, gnl|bosTau2|chr24 (33057042-33055840)
               

               
               1-1212, gnl|Hg17|chr18 (41819061-41817520)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               tbr (0.770891)
               

               
               ldo (0.485013)
               

               
               ste (0.270416)
               

               
               cbl (0.229595)
               

               
               nbm (0.198649)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.770891)
               

               
               ldo (0.485013)
               

               
               ste (0.270416)
               

               
               cbl (0.229595)
               

               
               nbm (0.198649)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)

	77-196, - strand, RNAz p=0.90499
	532-647, - strand, RNAz p=0.579463
	831-1029, - strand, RNAz p=0.983826

	1-1212, gnl\|bosTau2\|chr24 (33057042-33055840)
	1-1212, gnl\|Hg17\|chr18 (41819061-41817520)

	tbr (0.770891)
	ldo (0.485013)
	ste (0.270416)
	cbl (0.229595)
	nbm (0.198649)
	spl (0.143184)
	ssp (0.13552)
	pla (0.133672)