Non-Coding RNA Search

Ss1.1-rptbr0124_g2.5

Sequence:


               
               AGGCTCATAGCCTAGAAACAGCCCTGTGTTCGAGTAGACTGCAGAGTTGAACTAGTAATG
ATATGCCAGTGTGAGGAAGGGGAGGTAACTTATTGGGTGCATTTTATGTGCTAGGTGCTT
TACCATCTGATTCATTCAGTCTTCATGGTACCCTCTGAGGGAGTTTTTATCATCTCCATT
ATATAAATGGGGAAACTCATTTATAAGGCTCGGAGAGATTAAATCAATTGTTCTCTATCA
CACGGCGAATAAATAGATGAAATAAGATACAAAGCTTGTTTTGTCTGATTCAAAACCCTT
ACTTTTTCTATTAAACTACAATGCTTATTTATTTTTCTGTTCCTTTTCTTCCATAAATAT
TTATTGATAGATATGAGAGACTCCGATTTAGGAAGTATGGGGATCAGGATGAAAGGCAAG
TTCCAGTGGAGTTCAGAGGAGGAAGAGGCATCTTATAACTGTGGAACTCAGGGGAGATGG
CATTTAATTGGGGCAAAGAAGGCTAGAGAGGACACATGTATTCCAGAATTTTACAAAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCTCATAGCCTAGAAACAGCCCTGTGTTCGAGTAGACTGCAGAGTTGAACTAGTAATG
ATATGCCAGTGTGAGGAAGGGGAGGTAACTTATTGGGTGCATTTTATGTGCTAGGTGCTT
TACCATCTGATTCATTCAGTCTTCATGGTACCCTCTGAGGGAGTTTTTATCATCTCCATT
ATATAAATGGGGAAACTCATTTATAAGGCTCGGAGAGATTAAATCAATTGTTCTCTATCA
CACGGCGAATAAATAGATGAAATAAGATACAAAGCTTGTTTTGTCTGATTCAAAACCCTT
ACTTTTTCTATTAAACTACAATGCTTATTTATTTTTCTGTTCCTTTTCTTCCATAAATAT
TTATTGATAGATATGAGAGACTCCGATTTAGGAAGTATGGGGATCAGGATGAAAGGCAAG
TTCCAGTGGAGTTCAGAGGAGGAAGAGGCATCTTATAACTGTGGAACTCAGGGGAGATGG
CATTTAATTGGGGCAAAGAAGGCTAGAGAGGACACATGTATTCCAGAATTTTACAAAGTT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-539, gnl|bosTau2|chr9 (48605217-48604685)
               

               
               3-539, gnl|Hg17|chr6 (145989044-145988513)
               

               
               3-539, gnl|Mm7|chr10 (11156865-11157480)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-539, gnl|bosTau2|chr9 (48605217-48604685)
               

               
               3-539, gnl|Hg17|chr6 (145989044-145988513)
               

               
               3-539, gnl|Mm7|chr10 (11156865-11157480)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               tbr (0.308356)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               ste (0.135208)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.308356)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               ste (0.135208)

	3-539, gnl\|bosTau2\|chr9 (48605217-48604685)
	3-539, gnl\|Hg17\|chr6 (145989044-145988513)
	3-539, gnl\|Mm7\|chr10 (11156865-11157480)