Non-Coding RNA Search

Ss1.1-rptbr0124_i12.5

Sequence:


               
               TTCTTCTGAAGAAATAAATGTGACCCCCAAGCCACAATCTTTACTTCCAGCTGGAAAAGT
GGAGAGAAATGAAGCAGAGGGGAAGCAGACCCTTCCTCTCATGGAGGATGAGAATTTGGT
ATTGCGGAAAGCAAACAGAGAATATTCCAGGCCTTGCATAGAAGACAGCCAAGAAGAAAT
CAAAACACCATCTGAAATAATCCTCCGGGAACAAGTGTCTGGCCCATCAGTGGACCAGGT
CAAATCAGAAACTCTTCCTTCTGTTGGCCCATCAGTGGACCAGGTCAAATCAGAAACTCT
TCCTTCTGTTGTGAAAGCAGCCCATTTTCTGGCAGAAGAGGTAGAACCTGCATTGGGCAA
TGAAAAAGAAGCACAGCAGCCTGTGTGTCCTTCACGTGGAGAGAAGCCATTAGAAGAATC
AAAAGTGATTCTGTCAAAGGTTGTAGATGATGCTAATGAGAGAGGGAAACCAGCATCTGA
AGTGAAAATACCCACACAAACAAAACACCTCCCCTCAACCCAAGAAAATGAAGAACCTCA
GCTCCCAGAGTCACCTGAGGTAGTACAGAAGCTGCCTGAGGTGCAGAAGGCAGTGGAGCC
AGGCCTTTCTGAGGAAAAGGGAAAGAAAGGGATTTCATCTTTCACATCATGGATGTCCAG
TTTGTTTTTCCGATCAAGCACTCCAGATAATAAAGTGGCCAAAAAAGAAGCTTTAGCAAG
CCAAGCCAAGCCCATCTGTAGAGAAAGCAGAGACTGTGATAGAGTCTAGAGGTCCAGCTC
CAGCTGACATTCAGGCAACTGAGAAGCCAGCTGATCACATAATACCAGAGCCCAAACCTA
AAATTGCTGACAAACCCAGAGATACTTTAGTTAAATCTGGTGAGGGTCAAGACTTTAAAG
AAAAACCCACATCTTTATCAAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTTCTGAAGAAATAAATGTGACCCCCAAGCCACAATCTTTACTTCCAGCTGGAAAAGT
GGAGAGAAATGAAGCAGAGGGGAAGCAGACCCTTCCTCTCATGGAGGATGAGAATTTGGT
ATTGCGGAAAGCAAACAGAGAATATTCCAGGCCTTGCATAGAAGACAGCCAAGAAGAAAT
CAAAACACCATCTGAAATAATCCTCCGGGAACAAGTGTCTGGCCCATCAGTGGACCAGGT
CAAATCAGAAACTCTTCCTTCTGTTGGCCCATCAGTGGACCAGGTCAAATCAGAAACTCT
TCCTTCTGTTGTGAAAGCAGCCCATTTTCTGGCAGAAGAGGTAGAACCTGCATTGGGCAA
TGAAAAAGAAGCACAGCAGCCTGTGTGTCCTTCACGTGGAGAGAAGCCATTAGAAGAATC
AAAAGTGATTCTGTCAAAGGTTGTAGATGATGCTAATGAGAGAGGGAAACCAGCATCTGA
AGTGAAAATACCCACACAAACAAAACACCTCCCCTCAACCCAAGAAAATGAAGAACCTCA
GCTCCCAGAGTCACCTGAGGTAGTACAGAAGCTGCCTGAGGTGCAGAAGGCAGTGGAGCC
AGGCCTTTCTGAGGAAAAGGGAAAGAAAGGGATTTCATCTTTCACATCATGGATGTCCAG
TTTGTTTTTCCGATCAAGCACTCCAGATAATAAAGTGGCCAAAAAAGAAGCTTTAGCAAG
CCAAGCCAAGCCCATCTGTAGAGAAAGCAGAGACTGTGATAGAGTCTAGAGGTCCAGCTC
CAGCTGACATTCAGGCAACTGAGAAGCCAGCTGATCACATAATACCAGAGCCCAAACCTA
AAATTGCTGACAAACCCAGAGATACTTTAGTTAAATCTGGTGAGGGTCAAGACTTTAAAG
AAAAACCCACATCTTTATCAAATG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               41-240, + strand, RNAz p=0.718622
               

               
               98-254, - strand, RNAz p=0.839722

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-240, + strand, RNAz p=0.718622
               

               
               98-254, - strand, RNAz p=0.839722

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               2-266, gnl|bosTau2|chr10 (4514584-4514848)
               

               
               2-266, gnl|canFam2|chr3 (30112761-30112418)
               

               
               2-266, gnl|echTel1|scaffold_253975 (10083-10426)
               

               
               2-266, gnl|hg17|chr5 (79066262-79066605)
               

               
               2-266, gnl|Hg17|chr5 (79066285-79066549)
               

               
               2-266, gnl|loxAfr1|scaffold_8301 (8250-8593)
               

               
               2-266, gnl|monDom2|scaffold_27 (36273265-36272949)
               

               
               2-266, gnl|oryCun1|scaffold_197731 (11188-11531)
               

               
               2-266, gnl|panTro1|chr4 (36119546-36119203)
               

               
               2-266, gnl|rheMac2|chr6 (75956834-75957177)
               

               
               2-266, gnl|rn3|chr2 (23297480-23297167)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-266, gnl|bosTau2|chr10 (4514584-4514848)
               

               
               2-266, gnl|canFam2|chr3 (30112761-30112418)
               

               
               2-266, gnl|echTel1|scaffold_253975 (10083-10426)
               

               
               2-266, gnl|hg17|chr5 (79066262-79066605)
               

               
               2-266, gnl|Hg17|chr5 (79066285-79066549)
               

               
               2-266, gnl|loxAfr1|scaffold_8301 (8250-8593)
               

               
               2-266, gnl|monDom2|scaffold_27 (36273265-36272949)
               

               
               2-266, gnl|oryCun1|scaffold_197731 (11188-11531)
               

               
               2-266, gnl|panTro1|chr4 (36119546-36119203)
               

               
               2-266, gnl|rheMac2|chr6 (75956834-75957177)
               

               
               2-266, gnl|rn3|chr2 (23297480-23297167)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tbr (0.308356)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.308356)

	41-240, + strand, RNAz p=0.718622
	98-254, - strand, RNAz p=0.839722

	2-266, gnl\|bosTau2\|chr10 (4514584-4514848)
	2-266, gnl\|canFam2\|chr3 (30112761-30112418)
	2-266, gnl\|echTel1\|scaffold_253975 (10083-10426)
	2-266, gnl\|hg17\|chr5 (79066262-79066605)
	2-266, gnl\|Hg17\|chr5 (79066285-79066549)
	2-266, gnl\|loxAfr1\|scaffold_8301 (8250-8593)
	2-266, gnl\|monDom2\|scaffold_27 (36273265-36272949)
	2-266, gnl\|oryCun1\|scaffold_197731 (11188-11531)
	2-266, gnl\|panTro1\|chr4 (36119546-36119203)
	2-266, gnl\|rheMac2\|chr6 (75956834-75957177)
	2-266, gnl\|rn3\|chr2 (23297480-23297167)