Non-Coding RNA Search

Ss1.1-rptbr0124_m16.5

Sequence:


               
               GGCGAGGCGCTGCCCGGGCCGGCGGGCGGCGGGGAGGACGAGGAGGACGAGGAGCCCGGC
CGGGGCGAGGACGACGCCCCGGAGGCCGAGAAGTTCCTTGCGCGCAAACTCACCAAAGAC
CCCAGCTGCTCGCCCGGGAGGCCGGCCCGCTGGGCCCCGGGCCCCAAAGTGGACAACCGC
GCCGTCCGGAGCATCAGCGCTGCGCGCCGCGCCGGCAAGGAGTAGGGCGACCCGGGAGCC
CGCCGGGCGCCCCGGGACCCTCGCTGGGCGCCGGGCGCCGCGCCCCCCACCGGACCACAG
GAGGCCGAGGCCGTGTGCATAGTTTATTTTGTGTAAAAAAGCCCCACCCAAAGCAAAAAA
CAAATGTTTATTTTCTGTGTTTCTTTAACCTTGTATAAATTATTGGATGACAGGTGGGAA
ACAATGGAGTATTCTCAGATAGTTGCTATTTTTGTAACGTGTCTGTGTCGCACGCGCGTG
TGGCCGAAGAGAGCAGGTGTGTCCGTGTTCGCACCGGATTGCTTATCGTCTGTCACCAGA
GGTGGCGAACCATTTACAGACTCCTCCTTCATTCCTCACTCGGGGTTCTCGGTGGCCCCA
GGCCGGAGAGCCCGTGGGACCCGTGGCTGTCAGTGGGACCACCTGTGGCTGGCAGTGGGA
CCCACGGCTCTTGGTGGGACCCGTGACGTTCGGCGTGGCGCGTGGCTGTCGGTGGCACCT
GTGGTTGCAGCGGGGCGTGAGGTCCTTGGTGGGCCCGAGGCCCGTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGAGGCGCTGCCCGGGCCGGCGGGCGGCGGGGAGGACGAGGAGGACGAGGAGCCCGGC
CGGGGCGAGGACGACGCCCCGGAGGCCGAGAAGTTCCTTGCGCGCAAACTCACCAAAGAC
CCCAGCTGCTCGCCCGGGAGGCCGGCCCGCTGGGCCCCGGGCCCCAAAGTGGACAACCGC
GCCGTCCGGAGCATCAGCGCTGCGCGCCGCGCCGGCAAGGAGTAGGGCGACCCGGGAGCC
CGCCGGGCGCCCCGGGACCCTCGCTGGGCGCCGGGCGCCGCGCCCCCCACCGGACCACAG
GAGGCCGAGGCCGTGTGCATAGTTTATTTTGTGTAAAAAAGCCCCACCCAAAGCAAAAAA
CAAATGTTTATTTTCTGTGTTTCTTTAACCTTGTATAAATTATTGGATGACAGGTGGGAA
ACAATGGAGTATTCTCAGATAGTTGCTATTTTTGTAACGTGTCTGTGTCGCACGCGCGTG
TGGCCGAAGAGAGCAGGTGTGTCCGTGTTCGCACCGGATTGCTTATCGTCTGTCACCAGA
GGTGGCGAACCATTTACAGACTCCTCCTTCATTCCTCACTCGGGGTTCTCGGTGGCCCCA
GGCCGGAGAGCCCGTGGGACCCGTGGCTGTCAGTGGGACCACCTGTGGCTGGCAGTGGGA
CCCACGGCTCTTGGTGGGACCCGTGACGTTCGGCGTGGCGCGTGGCTGTCGGTGGCACCT
GTGGTTGCAGCGGGGCGTGAGGTCCTTGGTGGGCCCGAGGCCCGTGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8K2K7_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8K2K7_MOUSE

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-246, gnl|bosTau2|chr21 (49586461-49586705)
               

               
               1-246, gnl|Hg17|chr14 (104680310-104680017)
               

               
               1-246, gnl|Mm7|chr12 (110434067-110433781)
               


               
               263-712, gnl|bosTau2|chr21 (49586675-49587123)
               

               
               263-712, gnl|Hg17|chr14 (104680087-104679462)
               

               
               263-712, gnl|Mm7|chr12 (110433844-110433101)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-246, gnl|bosTau2|chr21 (49586461-49586705)
               

               
               1-246, gnl|Hg17|chr14 (104680310-104680017)
               

               
               1-246, gnl|Mm7|chr12 (110434067-110433781)
               


               
               263-712, gnl|bosTau2|chr21 (49586675-49587123)
               

               
               263-712, gnl|Hg17|chr14 (104680087-104679462)
               

               
               263-712, gnl|Mm7|chr12 (110433844-110433101)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cga (0.279096)
               

               
               tbr (0.154178)
               

               
               nca (0.136874)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               tbr (0.154178)
               

               
               nca (0.136874)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

	1-246, gnl\|bosTau2\|chr21 (49586461-49586705)
	1-246, gnl\|Hg17\|chr14 (104680310-104680017)
	1-246, gnl\|Mm7\|chr12 (110434067-110433781)

	263-712, gnl\|bosTau2\|chr21 (49586675-49587123)
	263-712, gnl\|Hg17\|chr14 (104680087-104679462)
	263-712, gnl\|Mm7\|chr12 (110433844-110433101)

	cga (0.279096)
	tbr (0.154178)
	nca (0.136874)
	pgl (0.118483)
	ebs (0.118301)