Non-Coding RNA Search

Ss1.1-rptbr0125_i4.5

Sequence:


               
               GGGATGCCATGTGCAAGCTACAACGATTCATCTTCCACGTGAACCTCTATGGCAGCATCT
TGTTCCTGACTTGCATCAGTGCGCACCGGTACAGCGGTGTGGTGTACCCTCTCAAGTCCC
TGGGCAGGCTCAAGAAGAAGAATGCGGTCTACATCAGCGTGCTGGTGTGGCTCATCGTCG
TGGTGGCGATCTCCCCCATCCTCTTCTACTCGGGCACTGGGATCCGAAAAAACAAAACCA
TCACCTGCTATGACACCACCTCAGATGAGTACCTGCGAAGTTATTTCATCTACAGCATGT
GCACGACCGTGGCCATGTTCTGTGTCCCCTTGGTGCTGATTTTGGGCTGTTACGGATTAA
TTGTGAGAGCTTTGATTTATAAAGACCTGGACAACTCACCTCTGAGGAGGAAATCCATTT
ACCTAGTGATTATTGTACTGACTGTTTTTGCCGTGTCTTACATCCCTTTCCACGTGATGA
AAACAATGAATTTGAGGGCCCGGCTGGATTTTCAGACCCCAGAAATGTGTGTTTTCAATG
ACAGGGTTTATGCCACTTATCAGGTGACAAGAGGTCTAGCAAGTCTCAATAGCTGTGTGG
ACCCCATTCTCTATTTCTTGGCAGGAGATACTTTCAGAAGGAGACTCTCCCGAGCCACCA
GGAAAGCTTCCAGAAGAAGTGAGGCAAATCTGCAGTCCAAGAGTGAAGACATGACCCTCA
ATATTCTATCGGAATTCAAGCAGAATGGAGATACAAGCTTGTGAAGATGCCAAACATTTT
ATAACATGCTCTTCTGTTCAAAGTGTACATGAGTGCTGGAGCTATCTGGATATTAATAGT
TTCTCCAAGAAAACTGACCACCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGATGCCATGTGCAAGCTACAACGATTCATCTTCCACGTGAACCTCTATGGCAGCATCT
TGTTCCTGACTTGCATCAGTGCGCACCGGTACAGCGGTGTGGTGTACCCTCTCAAGTCCC
TGGGCAGGCTCAAGAAGAAGAATGCGGTCTACATCAGCGTGCTGGTGTGGCTCATCGTCG
TGGTGGCGATCTCCCCCATCCTCTTCTACTCGGGCACTGGGATCCGAAAAAACAAAACCA
TCACCTGCTATGACACCACCTCAGATGAGTACCTGCGAAGTTATTTCATCTACAGCATGT
GCACGACCGTGGCCATGTTCTGTGTCCCCTTGGTGCTGATTTTGGGCTGTTACGGATTAA
TTGTGAGAGCTTTGATTTATAAAGACCTGGACAACTCACCTCTGAGGAGGAAATCCATTT
ACCTAGTGATTATTGTACTGACTGTTTTTGCCGTGTCTTACATCCCTTTCCACGTGATGA
AAACAATGAATTTGAGGGCCCGGCTGGATTTTCAGACCCCAGAAATGTGTGTTTTCAATG
ACAGGGTTTATGCCACTTATCAGGTGACAAGAGGTCTAGCAAGTCTCAATAGCTGTGTGG
ACCCCATTCTCTATTTCTTGGCAGGAGATACTTTCAGAAGGAGACTCTCCCGAGCCACCA
GGAAAGCTTCCAGAAGAAGTGAGGCAAATCTGCAGTCCAAGAGTGAAGACATGACCCTCA
ATATTCTATCGGAATTCAAGCAGAATGGAGATACAAGCTTGTGAAGATGCCAAACATTTT
ATAACATGCTCTTCTGTTCAAAGTGTACATGAGTGCTGGAGCTATCTGGATATTAATAGT
TTCTCCAAGAAAACTGACCACCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|22218278|gb|AAM94618.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|22218278|gb|AAM94618.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, + strand, RNAz p=0.526184

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.526184

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-770, gnl|bosTau2|chr1 (72676166-72676935)
               

               
               1-770, gnl|Hg17|chr3 (154036628-154037397)
               

               
               1-770, gnl|Mm7|chr3 (61160336-61161105)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-770, gnl|bosTau2|chr1 (72676166-72676935)
               

               
               1-770, gnl|Hg17|chr3 (154036628-154037397)
               

               
               1-770, gnl|Mm7|chr3 (61160336-61161105)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               bfe (0.299715)
               

               
               ssp (0.271039)
               

               
               tbr (0.154178)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.299715)
               

               
               ssp (0.271039)
               

               
               tbr (0.154178)
               

               
               ldo (0.0970026)

	1-770, gnl\|bosTau2\|chr1 (72676166-72676935)
	1-770, gnl\|Hg17\|chr3 (154036628-154037397)
	1-770, gnl\|Mm7\|chr3 (61160336-61161105)