Ss1.1-rptbr0126_g13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAAAACGCATCCAGATTTCTGATTTACCTCAGTTAGTTGCTGCTTTCCACAGTTTAGTG GGCTTGGCAGCTGTGCTTACCTGCATAGCTGAGTACATTGTAGAATATCCACATTTCGCT ACGGACGCGGCAGCTAATCTCACCAAGATTGTGGCCTACCTCGGTACTTACATTGGCGGA GTCACGTTCAGTGGGTCTCTTATTGCCTATGGAAAATTGCAGGGTATCCTGAAATCTGCC CCTCTCCTGCTCCCTGGGAGGCACCTGCTCAATGCAGGCCTGCTGGCCGCTAGTGTGGGT GGAATCATCCCGTTCATGGTGGACCCCAGCTTCACCACCGGCATTACCTGTCTGGGCTCC GTGTCGGCTCTCTCTGCTGTCATGGGTGTGACTTTGACGGCTGCCATCGGGGGTGCTGAC ATGCCTGTTGTCATCACTGTGCTGAACAGCTACTCGGGCTGGGCGCTGTGTGCAGAGGGC TTCCTGCTCAACAACAACCTGCTGACCATTGTGGGCGCGCTCATCGGCTCGTCGGGCGCC ATCCTGTCCTACATCATGTGTGTGGCAATGAATCGCTCCCTGGCTAATGTGATTCTTGGA GGCTACGGTACCACTTCAACAGCTGGTGGGAAACCCATGGAAATTTCTGGCACACATACA GAAATCAACCTTGACAACGCAATTGACATGATACGAGAAGCTAATAGCATTATTATTACT CCAGGCTATGGTCTCTGTGCAGCCAAAGCTCAGTACCCCATCGCTGATTTGGTAAAGATG CTCTCTGAACAGGGCAAAAAAGTCAGGTTTGGAATTCACCCAGTTGCAGGCCGAATGCCT GGTCAGCTTAATGTGCTGCTGGCTGAGGCTGGGGTGCCATATGATATTGTGTTGGAAATG GATGAGATCAACCACGATTTCCCAGACACTGATTTGGTCCTTGTAATTGGAGCTAATGAC ACTGTTAATTCAGCGGCTCAAGAAGACCCTAACTCTATTATTGCAGGCATGCCAGTCCTC GAGGTCTGGAAATCAAAGCAGGTCATTGTTATGAAGAGGTCCTTGGGTGTTGGCTATGCT GCAGTGGACAATCCAATCTTCTACAAACCTAACACAGCCATGCTTCTAGGCGATGCCAAG AAGACCTGTGATGCACTGCAGGCGAAAGTTAGAGAATCCTACCAGAAGTAAAATATAAAG ATCAAGCTGTTGCCTAACAAAGCCTCCTCTTCATATCTGGGAATAGGCAAATAAATCATC AACATATACAAACGATATGCATCTGAAGCAAAGCTCCTGGAGAAGAAGGAAGACTCTGAA AAAGTCAAGCAAAAATGAGATTTTTTCAAGAGCAGCAGTCCCTCGATTTTAAAAAAGGAT CGACCATTCTGAATGTCTTTCTCTGCATATTTTTTGTGTTATGAATTCCAAAAGTATTTT ACAAAAAAAGAAAGAACAGCCTCATTTTTAGATGTAATCCATTTGGATTTTTTCATTGTT CTTCAGTAGTCAGCAGTGTTTTAAGAAATTAAGTCTTTAGGAATTTGGGACTTAGATTAT ACATGGATCTGAAATCTGACACAATATAAACATTACAGTCCCCTGCATTTATGTTTTTTT GCAACAAATGTGACTAATTTGAAATTTTTATCAACTCGAGCATAATCCAAATTAACCATA TCAAATTGGTTTCAATTTTTCAGACTGTACTTTTGACTCTATATTTCAGGGGTGTGTTTT CTCACTTCTATTTTAATACATTAAAGGACTAGATAATCTTTCAGAGATGCTGGAAACAAA TCATTTGCTTTGTATGTTTCATTAGAATTCCAATGAAACATATAATATGAAATCAGTATT AATTGTGTTTTTTAAACCCCATTTCCAATTGGAGATCTCTTTAATTTCAATCAGTTTATA ATGATGTGTAGTACTGTATTAAGTGCACTTGAATGGAATTCAACTATTTGCCTAATAAAA TAAGTCCATCATGAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAAAACGCATCCAGATTTCTGATTTACCTCAGTTAGTTGCTGCTTTCCACAGTTTAGTG GGCTTGGCAGCTGTGCTTACCTGCATAGCTGAGTACATTGTAGAATATCCACATTTCGCT ACGGACGCGGCAGCTAATCTCACCAAGATTGTGGCCTACCTCGGTACTTACATTGGCGGA GTCACGTTCAGTGGGTCTCTTATTGCCTATGGAAAATTGCAGGGTATCCTGAAATCTGCC CCTCTCCTGCTCCCTGGGAGGCACCTGCTCAATGCAGGCCTGCTGGCCGCTAGTGTGGGT GGAATCATCCCGTTCATGGTGGACCCCAGCTTCACCACCGGCATTACCTGTCTGGGCTCC GTGTCGGCTCTCTCTGCTGTCATGGGTGTGACTTTGACGGCTGCCATCGGGGGTGCTGAC ATGCCTGTTGTCATCACTGTGCTGAACAGCTACTCGGGCTGGGCGCTGTGTGCAGAGGGC TTCCTGCTCAACAACAACCTGCTGACCATTGTGGGCGCGCTCATCGGCTCGTCGGGCGCC ATCCTGTCCTACATCATGTGTGTGGCAATGAATCGCTCCCTGGCTAATGTGATTCTTGGA GGCTACGGTACCACTTCAACAGCTGGTGGGAAACCCATGGAAATTTCTGGCACACATACA GAAATCAACCTTGACAACGCAATTGACATGATACGAGAAGCTAATAGCATTATTATTACT CCAGGCTATGGTCTCTGTGCAGCCAAAGCTCAGTACCCCATCGCTGATTTGGTAAAGATG CTCTCTGAACAGGGCAAAAAAGTCAGGTTTGGAATTCACCCAGTTGCAGGCCGAATGCCT GGTCAGCTTAATGTGCTGCTGGCTGAGGCTGGGGTGCCATATGATATTGTGTTGGAAATG GATGAGATCAACCACGATTTCCCAGACACTGATTTGGTCCTTGTAATTGGAGCTAATGAC ACTGTTAATTCAGCGGCTCAAGAAGACCCTAACTCTATTATTGCAGGCATGCCAGTCCTC GAGGTCTGGAAATCAAAGCAGGTCATTGTTATGAAGAGGTCCTTGGGTGTTGGCTATGCT GCAGTGGACAATCCAATCTTCTACAAACCTAACACAGCCATGCTTCTAGGCGATGCCAAG AAGACCTGTGATGCACTGCAGGCGAAAGTTAGAGAATCCTACCAGAAGTAAAATATAAAG ATCAAGCTGTTGCCTAACAAAGCCTCCTCTTCATATCTGGGAATAGGCAAATAAATCATC AACATATACAAACGATATGCATCTGAAGCAAAGCTCCTGGAGAAGAAGGAAGACTCTGAA AAAGTCAAGCAAAAATGAGATTTTTTCAAGAGCAGCAGTCCCTCGATTTTAAAAAAGGAT CGACCATTCTGAATGTCTTTCTCTGCATATTTTTTGTGTTATGAATTCCAAAAGTATTTT ACAAAAAAAGAAAGAACAGCCTCATTTTTAGATGTAATCCATTTGGATTTTTTCATTGTT CTTCAGTAGTCAGCAGTGTTTTAAGAAATTAAGTCTTTAGGAATTTGGGACTTAGATTAT ACATGGATCTGAAATCTGACACAATATAAACATTACAGTCCCCTGCATTTATGTTTTTTT GCAACAAATGTGACTAATTTGAAATTTTTATCAACTCGAGCATAATCCAAATTAACCATA TCAAATTGGTTTCAATTTTTCAGACTGTACTTTTGACTCTATATTTCAGGGGTGTGTTTT CTCACTTCTATTTTAATACATTAAAGGACTAGATAATCTTTCAGAGATGCTGGAAACAAA TCATTTGCTTTGTATGTTTCATTAGAATTCCAATGAAACATATAATATGAAATCAGTATT AATTGTGTTTTTTAAACCCCATTTCCAATTGGAGATCTCTTTAATTTCAATCAGTTTATA ATGATGTGTAGTACTGTATTAAGTGCACTTGAATGGAATTCAACTATTTGCCTAATAAAA TAAGTCCATCATGAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-159, - strand, RNAz p=0.878117 | |
| 805-1909, + strand, RNAz p=0.998061 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-159, - strand, RNAz p=0.878117 | |
| 805-1909, + strand, RNAz p=0.998061 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 1-226, gnl|bosTau2|chr20 (16788137-16787912) | |
| 1-226, gnl|canFam2|chr4 (69585478-69585170) | |
| 1-226, gnl|danRer3|chr21 (10497941-10497653) | |
| 1-226, gnl|dasNov1|scaffold_3131 (28514-28814) | |
| 1-226, gnl|echTel1|scaffold_159319 (3645-3945) | |
| 1-226, gnl|fr1|chrUn (202289519-202289797) | |
| 1-226, gnl|galGal2|chrZ (6833980-6834272) | |
| 1-226, gnl|hg17|chr5 (43691662-43691966) | |
| 1-226, gnl|Hg17|chr5 (43691710-43691935) | |
| 1-226, gnl|loxAfr1|scaffold_7147 (29094-28788) | |
| 1-226, gnl|mm7|chr13 (116579285-116578977) | |
| 1-226, gnl|Mm7|chr13 (116579231-116579006) | |
| 1-226, gnl|monDom2|scaffold_20 (27057204-27056899) | |
| 1-226, gnl|oryCun1|scaffold_198254 (4983-4680) | |
| 1-226, gnl|panTro1|chr4 (72829579-72829275) | |
| 1-226, gnl|rheMac2|chr6 (43590813-43591121) | |
| 1-226, gnl|rn3|chr2 (51460610-51460296) | |
| 1-226, gnl|tetNig1|chr4 (1182340-1182580) | |
| 1-226, gnl|xenTro1|scaffold_938 (211557-211851) | |
| 378-572, gnl|bosTau2|chr20 (16785092-16784897) | |
| 378-572, gnl|Hg17|chr5 (43695022-43695217) | |
| 378-572, gnl|Mm7|chr13 (116575621-116575416) | |
| 805-944, gnl|bosTau2|chr20 (16758222-16758082) | |
| 805-944, gnl|canFam2|chr4 (69552695-69552528) | |
| 805-944, gnl|danRer3|chr21 (10476749-10476590) | |
| 805-944, gnl|dasNov1|scaffold_3211 (8494-8651) | |
| 805-944, gnl|echTel1|scaffold_280632 (92282-92147) | |
| 805-944, gnl|fr1|chrUn (202293124-202293298) | |
| 805-944, gnl|galGal2|chrZ (6851587-6851735) | |
| 805-944, gnl|hg17|chr5 (43735952-43736119) | |
| 805-944, gnl|Hg17|chr5 (43735976-43736117) | |
| 805-944, gnl|loxAfr1|scaffold_12109 (50950-50783) | |
| 805-944, gnl|mm7|chr13 (116549070-116548904) | |
| 805-944, gnl|Mm7|chr13 (116549044-116548876) | |
| 805-944, gnl|monDom2|scaffold_20 (27016246-27016093) | |
| 805-944, gnl|oryCun1|scaffold_213244 (76697-76864) | |
| 805-944, gnl|panTro1|chr4 (72783877-72783710) | |
| 805-944, gnl|rheMac2|chr6 (43638760-43638927) | |
| 805-944, gnl|rn3|chr2 (51429080-51428914) | |
| 805-944, gnl|tetNig1|chr4 (1185605-1185733) | |
| 805-944, gnl|xenTro1|scaffold_938 (230512-230657) | |
| 1040-1993, gnl|bosTau2|chr20 (16754526-16753581) | |
| 1040-1993, gnl|Hg17|chr5 (43740112-43741086) | |
| 1040-1993, gnl|Mm7|chr13 (116545505-116544632) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-226, gnl|bosTau2|chr20 (16788137-16787912) | |
| 1-226, gnl|canFam2|chr4 (69585478-69585170) | |
| 1-226, gnl|danRer3|chr21 (10497941-10497653) | |
| 1-226, gnl|dasNov1|scaffold_3131 (28514-28814) | |
| 1-226, gnl|echTel1|scaffold_159319 (3645-3945) | |
| 1-226, gnl|fr1|chrUn (202289519-202289797) | |
| 1-226, gnl|galGal2|chrZ (6833980-6834272) | |
| 1-226, gnl|hg17|chr5 (43691662-43691966) | |
| 1-226, gnl|Hg17|chr5 (43691710-43691935) | |
| 1-226, gnl|loxAfr1|scaffold_7147 (29094-28788) | |
| 1-226, gnl|mm7|chr13 (116579285-116578977) | |
| 1-226, gnl|Mm7|chr13 (116579231-116579006) | |
| 1-226, gnl|monDom2|scaffold_20 (27057204-27056899) | |
| 1-226, gnl|oryCun1|scaffold_198254 (4983-4680) | |
| 1-226, gnl|panTro1|chr4 (72829579-72829275) | |
| 1-226, gnl|rheMac2|chr6 (43590813-43591121) | |
| 1-226, gnl|rn3|chr2 (51460610-51460296) | |
| 1-226, gnl|tetNig1|chr4 (1182340-1182580) | |
| 1-226, gnl|xenTro1|scaffold_938 (211557-211851) | |
| 378-572, gnl|bosTau2|chr20 (16785092-16784897) | |
| 378-572, gnl|Hg17|chr5 (43695022-43695217) | |
| 378-572, gnl|Mm7|chr13 (116575621-116575416) | |
| 805-944, gnl|bosTau2|chr20 (16758222-16758082) | |
| 805-944, gnl|canFam2|chr4 (69552695-69552528) | |
| 805-944, gnl|danRer3|chr21 (10476749-10476590) | |
| 805-944, gnl|dasNov1|scaffold_3211 (8494-8651) | |
| 805-944, gnl|echTel1|scaffold_280632 (92282-92147) | |
| 805-944, gnl|fr1|chrUn (202293124-202293298) | |
| 805-944, gnl|galGal2|chrZ (6851587-6851735) | |
| 805-944, gnl|hg17|chr5 (43735952-43736119) | |
| 805-944, gnl|Hg17|chr5 (43735976-43736117) | |
| 805-944, gnl|loxAfr1|scaffold_12109 (50950-50783) | |
| 805-944, gnl|mm7|chr13 (116549070-116548904) | |
| 805-944, gnl|Mm7|chr13 (116549044-116548876) | |
| 805-944, gnl|monDom2|scaffold_20 (27016246-27016093) | |
| 805-944, gnl|oryCun1|scaffold_213244 (76697-76864) | |
| 805-944, gnl|panTro1|chr4 (72783877-72783710) | |
| 805-944, gnl|rheMac2|chr6 (43638760-43638927) | |
| 805-944, gnl|rn3|chr2 (51429080-51428914) | |
| 805-944, gnl|tetNig1|chr4 (1185605-1185733) | |
| 805-944, gnl|xenTro1|scaffold_938 (230512-230657) | |
| 1040-1993, gnl|bosTau2|chr20 (16754526-16753581) | |
| 1040-1993, gnl|Hg17|chr5 (43740112-43741086) | |
| 1040-1993, gnl|Mm7|chr13 (116545505-116544632) |
| Expressed library(ies): 39 entry(ies) | More info |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
| tbr (2.1585) | |
| bfe (1.94815) | |
| vin (1.66279) | |
| ldo (0.873024) | |
| sme (0.610874) | |
| lin (0.582411) | |
| kid (0.518941) | |
| isp (0.451128) | |
| hlv (0.417769) | |
| fat (0.294855) | |
| liv (0.292569) | |
| ste (0.270416) | |
| cbe (0.239234) | |
| pan (0.23596) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| mas (0.210305) | |
| hea (0.204499) | |
| jej (0.197844) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| rec (0.17307) | |
| nco (0.161734) | |
| lun (0.150489) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| thg (0.126791) | |
| bla (0.124347) | |
| tra (0.123092) | |
| cly (0.120642) | |
| med (0.116252) | |
| cbl (0.114797) |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (2.1585) | |
| bfe (1.94815) | |
| vin (1.66279) | |
| ldo (0.873024) | |
| sme (0.610874) | |
| lin (0.582411) | |
| kid (0.518941) | |
| isp (0.451128) | |
| hlv (0.417769) | |
| fat (0.294855) | |
| liv (0.292569) | |
| ste (0.270416) | |
| cbe (0.239234) | |
| pan (0.23596) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| mas (0.210305) | |
| hea (0.204499) | |
| jej (0.197844) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| rec (0.17307) | |
| nco (0.161734) | |
| lun (0.150489) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| thg (0.126791) | |
| bla (0.124347) | |
| tra (0.123092) | |
| cly (0.120642) | |
| med (0.116252) | |
| cbl (0.114797) |