Non-Coding RNA Search

Ss1.1-rptbr0127_e21.5

Sequence:


               
               CAAAAAAAAGAAAAAAAATCTTTTTGAACTGTGAGCTTTACTGATTACTTTAGAATTTTT
TGGTCTCCCCCCCCTTCTGCAGTGAATTAATTGGATATATATCAGCTGACACGGATAGAT
TGATATTTCTGATAGTTATTTTTATGTAAGGAGCATGGAAATGAACTTTATATATGTGTG
TGTATATATATGTACTTACTGTGTTGTCAGAGTTGAATGATAGAGGTTGTTTTTAAAGCA
AAAAGAAAACACCTAATTATTGAGATCCTCCCATAAGTATTCCTTATTTTTTCTTCACAG
TTTTTCAAGCATGCAAAAACAGTTTATTGTAACTCATTGAAATATTAACAATTAATTGCG
AATACATGCTATATCGGCTCCTTTGTTCCTAATACCAGAGAAAAATTGTGGTAGATTTTG
ACGTAAAAAGACAAAAATTATCATCAAGTTCTCTTTGGCTGAAAGATTTGGAAGATACTC
TTAAATTTAATTTGCTAGGAAAACATTTAAAAGTATATCTAACTCCTTTGGGTAGGCGGA
TACATTTCCATGTCATTTCTGCAGTTATAGACTTTGAGCTTCCGTGTCAATGGCATGCTC
CATTGACTGCCAGCTCTCGTCTTGCAGTGAGTGATATTAACCCATAGAAGGCAAGTAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAAAAAAGAAAAAAAATCTTTTTGAACTGTGAGCTTTACTGATTACTTTAGAATTTTT
TGGTCTCCCCCCCCTTCTGCAGTGAATTAATTGGATATATATCAGCTGACACGGATAGAT
TGATATTTCTGATAGTTATTTTTATGTAAGGAGCATGGAAATGAACTTTATATATGTGTG
TGTATATATATGTACTTACTGTGTTGTCAGAGTTGAATGATAGAGGTTGTTTTTAAAGCA
AAAAGAAAACACCTAATTATTGAGATCCTCCCATAAGTATTCCTTATTTTTTCTTCACAG
TTTTTCAAGCATGCAAAAACAGTTTATTGTAACTCATTGAAATATTAACAATTAATTGCG
AATACATGCTATATCGGCTCCTTTGTTCCTAATACCAGAGAAAAATTGTGGTAGATTTTG
ACGTAAAAAGACAAAAATTATCATCAAGTTCTCTTTGGCTGAAAGATTTGGAAGATACTC
TTAAATTTAATTTGCTAGGAAAACATTTAAAAGTATATCTAACTCCTTTGGGTAGGCGGA
TACATTTCCATGTCATTTCTGCAGTTATAGACTTTGAGCTTCCGTGTCAATGGCATGCTC
CATTGACTGCCAGCTCTCGTCTTGCAGTGAGTGATATTAACCCATAGAAGGCAAGTAATT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               4-660, gnl|bosTau2|chr20 (32690720-32691372)
               

               
               4-660, gnl|Hg17|chr5 (16527786-16527142)
               

               
               4-660, gnl|Mm7|chr15 (26075168-26075815)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-660, gnl|bosTau2|chr20 (32690720-32691372)
               

               
               4-660, gnl|Hg17|chr5 (16527786-16527142)
               

               
               4-660, gnl|Mm7|chr15 (26075168-26075815)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               amn (0.417711)
               

               
               pla (0.267344)
               

               
               pan (0.23596)
               

               
               aor (0.195274)
               

               
               tbr (0.154178)
               

               
               cbr (0.127975)
               

               
               ldo (0.0970026)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               pla (0.267344)
               

               
               pan (0.23596)
               

               
               aor (0.195274)
               

               
               tbr (0.154178)
               

               
               cbr (0.127975)
               

               
               ldo (0.0970026)

	4-660, gnl\|bosTau2\|chr20 (32690720-32691372)
	4-660, gnl\|Hg17\|chr5 (16527786-16527142)
	4-660, gnl\|Mm7\|chr15 (26075168-26075815)

	amn (0.417711)
	pla (0.267344)
	pan (0.23596)
	aor (0.195274)
	tbr (0.154178)
	cbr (0.127975)
	ldo (0.0970026)