Non-Coding RNA Search

Ss1.1-rptbr0128_f13.5

Sequence:


               
               GGGCAACATATGTGAATATCAAAAATTCTTGTGAATTTTAGTCTATTTCAGCTCAAGAGT
TATATACTCAGGCAGTGTTTTTACTTAATAACTATGATGACCTTAGAAAACAAGTAGGCT
TTAAAAAGCAGTCCTAATTAGGACCCCTACTCTGCTTGTCATGCTTCCCTGATAAGTAAT
AGCTTTTGTAAAGTATTTAGGCTGATACACGTGCAGTATGAAAATGTTCTGAAATGCAAA
TTAGAAGACCAATTTTTAGAAGCACTTACAACATAGAACTAAGATTTAGAATGTGTGTCC
ACTTATAATTAAATAATCTTATGTTCATAATGCGAACATGTAGTAGAATTAAAGCATTAC
TTGTATAATCTTATCAGAAAGGGAGAAGGAAACAAGAATTTTTAGCAATGTTCTATTTAA
TATCTGTGTTTTGAATATTTAAAGATATTCTGATGGTAAGGTTGCCAAAGTAGTTTTGAA
TTCATAGAAATTATTTATGCCATAGTAATGTAGGATGTGTTTACACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCAACATATGTGAATATCAAAAATTCTTGTGAATTTTAGTCTATTTCAGCTCAAGAGT
TATATACTCAGGCAGTGTTTTTACTTAATAACTATGATGACCTTAGAAAACAAGTAGGCT
TTAAAAAGCAGTCCTAATTAGGACCCCTACTCTGCTTGTCATGCTTCCCTGATAAGTAAT
AGCTTTTGTAAAGTATTTAGGCTGATACACGTGCAGTATGAAAATGTTCTGAAATGCAAA
TTAGAAGACCAATTTTTAGAAGCACTTACAACATAGAACTAAGATTTAGAATGTGTGTCC
ACTTATAATTAAATAATCTTATGTTCATAATGCGAACATGTAGTAGAATTAAAGCATTAC
TTGTATAATCTTATCAGAAAGGGAGAAGGAAACAAGAATTTTTAGCAATGTTCTATTTAA
TATCTGTGTTTTGAATATTTAAAGATATTCTGATGGTAAGGTTGCCAAAGTAGTTTTGAA
TTCATAGAAATTATTTATGCCATAGTAATGTAGGATGTGTTTACACCT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-528, gnl|bosTau2|chr2 (43803985-43803480)
               

               
               11-528, gnl|Hg17|chr2 (120454403-120454945)
               

               
               11-528, gnl|Mm7|chr1 (119517045-119516557)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-528, gnl|bosTau2|chr2 (43803985-43803480)
               

               
               11-528, gnl|Hg17|chr2 (120454403-120454945)
               

               
               11-528, gnl|Mm7|chr1 (119517045-119516557)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cbe (0.239234)
               

               
               tbr (0.154178)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               tbr (0.154178)

	11-528, gnl\|bosTau2\|chr2 (43803985-43803480)
	11-528, gnl\|Hg17\|chr2 (120454403-120454945)
	11-528, gnl\|Mm7\|chr1 (119517045-119516557)