Non-Coding RNA Search

Ss1.1-rptbr0133_l6.5

Sequence:


               
               ATGCCGAGAGTGATGTGCAAGGATGCTGGGGCAGGATCTGAAAGGTCAGGTGGGGATACA
GCTGACGAAGACCGGACTGCTGAGGCTTTGGGCAACGTGGAGAACTGCTGGGCCCTGACT
GAATTGTTGCCATGTGGGAGTTTGGCAAGATACTGCCAGTTTTCTGATTTTACAAGGATA
AAACTTCATACCGTGGTTTTTATATTTAGGTACTATAAGAGTACATATGTATAATCCGTA
TGTACACAAATTATGTCCAGGCCATAGATATATGGGTTATGTTAGTTGGGAACTACAGTG
TGAAGTAAAAATCTGCAAACACTGCAAGACACAAGAAGTCCCAGCCAGCCATCTGTGGCC
TCCGCCGTAAGTAGAGGTGCTTAACTTAGCCAGATGCTTTAAATGACTCACTATAAAGCC
TGAGAAAAGTCTGAGAAATGAACGTCATGTCAAAGGATAAAATCATGGGAACAATTTGGG
TTTGTTACAAAGTCTTAGATATTTTTAAAAATCATCTTTCCATTCCTCAAATTGTGTTCT
GTAAAGAGTTCTGCCTTTCAGTGTCCATGTTCCTTTAGACCTCTGTCAGCACCACCGCAT
GATTTTTCTTCTAGTCCTACTCCCGCAAGAAAAACCCCTTTATCATTTTCCGGCATTTTT
GGCTATGGTCCCCAAGTGTTCCCTCAAACAGTTCCTGGTGAATCTGTACCTGACATTTGC
TACAGTAATGTGAATTCCCATGCTGTTTATACCTAACAAAGATCCAAAGCCATCATTTTA
ACCTGAAAAAATCTTTTGATTTCTAAATGTGCTCAAAACAGGTCAGCAGAAATTCTCTGC
ATTTCTGGCAGTAACTATTGTAGGAGATGGGAATTCTGGTCAGGATGGTGTGGTGGATGT
CTCCTTTTTACTTTATATACCTGGAGATGATTGGAATTTGTTCCACTGAATGTGTATTAC
TTTTATCATTACAAATAAAGATTTAAAACGGCATATTTGACAAGTTAGTGAAAAGTGTAG
TAGATAAATCAGTTGAATAGTTTTCTTAGCAAGGCTGTTTAGCATTGATTTGACCAAGCC
TATAATCAAAGTTTGATTCTGTTTGAATTATTTGGAAGTAGTAATTGCTCTACTTATGCT
CTGCCTTGTTTTCTGAAGTCCTTTAAAAAAAAACTATCAACCTACACAAACAACAGTTTG
TAATACTTTGTCGCGCTCTTCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCCGAGAGTGATGTGCAAGGATGCTGGGGCAGGATCTGAAAGGTCAGGTGGGGATACA
GCTGACGAAGACCGGACTGCTGAGGCTTTGGGCAACGTGGAGAACTGCTGGGCCCTGACT
GAATTGTTGCCATGTGGGAGTTTGGCAAGATACTGCCAGTTTTCTGATTTTACAAGGATA
AAACTTCATACCGTGGTTTTTATATTTAGGTACTATAAGAGTACATATGTATAATCCGTA
TGTACACAAATTATGTCCAGGCCATAGATATATGGGTTATGTTAGTTGGGAACTACAGTG
TGAAGTAAAAATCTGCAAACACTGCAAGACACAAGAAGTCCCAGCCAGCCATCTGTGGCC
TCCGCCGTAAGTAGAGGTGCTTAACTTAGCCAGATGCTTTAAATGACTCACTATAAAGCC
TGAGAAAAGTCTGAGAAATGAACGTCATGTCAAAGGATAAAATCATGGGAACAATTTGGG
TTTGTTACAAAGTCTTAGATATTTTTAAAAATCATCTTTCCATTCCTCAAATTGTGTTCT
GTAAAGAGTTCTGCCTTTCAGTGTCCATGTTCCTTTAGACCTCTGTCAGCACCACCGCAT
GATTTTTCTTCTAGTCCTACTCCCGCAAGAAAAACCCCTTTATCATTTTCCGGCATTTTT
GGCTATGGTCCCCAAGTGTTCCCTCAAACAGTTCCTGGTGAATCTGTACCTGACATTTGC
TACAGTAATGTGAATTCCCATGCTGTTTATACCTAACAAAGATCCAAAGCCATCATTTTA
ACCTGAAAAAATCTTTTGATTTCTAAATGTGCTCAAAACAGGTCAGCAGAAATTCTCTGC
ATTTCTGGCAGTAACTATTGTAGGAGATGGGAATTCTGGTCAGGATGGTGTGGTGGATGT
CTCCTTTTTACTTTATATACCTGGAGATGATTGGAATTTGTTCCACTGAATGTGTATTAC
TTTTATCATTACAAATAAAGATTTAAAACGGCATATTTGACAAGTTAGTGAAAAGTGTAG
TAGATAAATCAGTTGAATAGTTTTCTTAGCAAGGCTGTTTAGCATTGATTTGACCAAGCC
TATAATCAAAGTTTGATTCTGTTTGAATTATTTGGAAGTAGTAATTGCTCTACTTATGCT
CTGCCTTGTTTTCTGAAGTCCTTTAAAAAAAAACTATCAACCTACACAAACAACAGTTTG
TAATACTTTGTCGCGCTCTTCCTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               199-336, - strand, RNAz p=0.999492

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               199-336, - strand, RNAz p=0.999492

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               126-1224, gnl|bosTau2|chr13 (24249243-24248149)
               

               
               126-1224, gnl|Hg17|chr20 (18417727-18415997)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               126-1224, gnl|bosTau2|chr13 (24249243-24248149)
               

               
               126-1224, gnl|Hg17|chr20 (18417727-18415997)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               bla (0.373042)
               

               
               lin (0.291206)
               

               
               lnt (0.284616)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               clu (0.119646)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.373042)
               

               
               lin (0.291206)
               

               
               lnt (0.284616)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               clu (0.119646)

	126-1224, gnl\|bosTau2\|chr13 (24249243-24248149)
	126-1224, gnl\|Hg17\|chr20 (18417727-18415997)

	bla (0.373042)
	lin (0.291206)
	lnt (0.284616)
	kid (0.259471)
	ova (0.258264)
	fco (0.157208)
	tbr (0.154178)
	lun (0.150489)
	bfe (0.149858)
	ski (0.146735)
	ret (0.128733)
	sug (0.127291)
	tra (0.123092)
	clu (0.119646)