Ss1.1-rptbr0134_l18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGAAACAGGAAGTGACGACCATTCTGGCGCGCGCCGGGCGCTGTTTCTTCTCAGGCTCCG GGATCGGCGGCGGCGGCGGCGGCGGCGGTGTTTTAAGTCAAATGGGTGATGAAAAGGACT CTTGGAAAGTGAAAACTTTAGATGAAATTCTTCAGGAAAAGAAACGACGGAAAGAACAAG AGGAAAAAGCAGAGATAAAACGCTTAAAAAATTCTGATGACCGGGATTCCAAGCGGGATT CCCTTGAGGAGGGGGAGCTGAGGGACCACCGCATGGAGATAACAATCAGGAACTCGCCAT ACAGAAGAGAGGACTCCATGGAAGACAGAGGAGAGGAAGACGATTCCTTGGCCATCAAAC CGCCCCAGCAAATGTCTCGGAAAGAAAAGGCTCATCACAGGAAAGATGAAAAGAGAAAAG AGAAGCGTAGGCATCGCAGTCATTCAGCCGAAGGGGGTATAGCACGTTTGTTTTCTTCTG TGTTGTGCTGAGATTCCGCCTGTTTCCTCTTCCGTGGTCTTCCGCCTTCCGCAGCGCCCA GCAGAAAGACAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGAAACAGGAAGTGACGACCATTCTGGCGCGCGCCGGGCGCTGTTTCTTCTCAGGCTCCG GGATCGGCGGCGGCGGCGGCGGCGGCGGTGTTTTAAGTCAAATGGGTGATGAAAAGGACT CTTGGAAAGTGAAAACTTTAGATGAAATTCTTCAGGAAAAGAAACGACGGAAAGAACAAG AGGAAAAAGCAGAGATAAAACGCTTAAAAAATTCTGATGACCGGGATTCCAAGCGGGATT CCCTTGAGGAGGGGGAGCTGAGGGACCACCGCATGGAGATAACAATCAGGAACTCGCCAT ACAGAAGAGAGGACTCCATGGAAGACAGAGGAGAGGAAGACGATTCCTTGGCCATCAAAC CGCCCCAGCAAATGTCTCGGAAAGAAAAGGCTCATCACAGGAAAGATGAAAAGAGAAAAG AGAAGCGTAGGCATCGCAGTCATTCAGCCGAAGGGGGTATAGCACGTTTGTTTTCTTCTG TGTTGTGCTGAGATTCCGCCTGTTTCCTCTTCCGTGGTCTTCCGCCTTCCGCAGCGCCCA GCAGAAAGACAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 85-212, + strand, RNAz p=0.712808 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 85-212, + strand, RNAz p=0.712808 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_033537, + |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 85-212, gnl|bosTau2|chr16 (37671317-37671444) | |
| 85-212, gnl|canFam2|chr5 (59714260-59714412) | |
| 85-212, gnl|canFam2|chr5 (59714259-59714412) | |
| 85-212, gnl|echTel1|scaffold_287752 (124172-124326) | |
| 85-212, gnl|echTel1|scaffold_287752 (124172-124326) | |
| 85-212, gnl|fr1|chrUn (103301457-103301595) | |
| 85-212, gnl|fr1|chrUn (103301457-103301595) | |
| 85-212, gnl|galGal2|chr21 (1912204-1912076) | |
| 85-212, gnl|galGal2|chr21 (1912204-1912076) | |
| 85-212, gnl|hg17|chr1 (1686299-1686453) | |
| 85-212, gnl|Hg17|chr1 (1686436-1686309) | |
| 85-212, gnl|hg17|chr1_random (1287382-1287536) | |
| 85-212, gnl|mm7|chr4 (154615207-154615054) | |
| 85-212, gnl|mm7|chr4 (154615208-154615054) | |
| 85-212, gnl|Mm7|chr4 (154615069-154615196) | |
| 85-212, gnl|monDom2|scaffold_196 (658204-658357) | |
| 85-212, gnl|monDom2|scaffold_196 (658203-658357) | |
| 85-212, gnl|oryCun1|scaffold_145100 (3609-3467) | |
| 85-212, gnl|oryCun1|scaffold_145100 (3610-3467) | |
| 85-212, gnl|panTro1|chr1 (1545101-1545254) | |
| 85-212, gnl|panTro1|chr1 (1545100-1545254) | |
| 85-212, gnl|rheMac2|chr1 (4722073-4722226) | |
| 85-212, gnl|rheMac2|chr1 (4722072-4722226) | |
| 85-212, gnl|rn3|chr5 (172471002-172470849) | |
| 85-212, gnl|rn3|chr5 (172471003-172470849) | |
| 85-212, gnl|tetNig1|chrUn_random (28238005-28237891) | |
| 85-212, gnl|tetNig1|chrUn_random (28238005-28237891) | |
| 85-212, gnl|xenTro1|scaffold_609 (475268-475106) | |
| 85-212, gnl|xenTro1|scaffold_609 (475269-475106) | |
| 326-549, gnl|bosTau2|chr16 (37673514-37673737) | |
| 326-549, gnl|Hg17|chr1 (1683059-1682836) | |
| 326-549, gnl|Mm7|chr4 (154618235-154618451) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 85-212, gnl|bosTau2|chr16 (37671317-37671444) | |
| 85-212, gnl|canFam2|chr5 (59714260-59714412) | |
| 85-212, gnl|canFam2|chr5 (59714259-59714412) | |
| 85-212, gnl|echTel1|scaffold_287752 (124172-124326) | |
| 85-212, gnl|echTel1|scaffold_287752 (124172-124326) | |
| 85-212, gnl|fr1|chrUn (103301457-103301595) | |
| 85-212, gnl|fr1|chrUn (103301457-103301595) | |
| 85-212, gnl|galGal2|chr21 (1912204-1912076) | |
| 85-212, gnl|galGal2|chr21 (1912204-1912076) | |
| 85-212, gnl|hg17|chr1 (1686299-1686453) | |
| 85-212, gnl|Hg17|chr1 (1686436-1686309) | |
| 85-212, gnl|hg17|chr1_random (1287382-1287536) | |
| 85-212, gnl|mm7|chr4 (154615207-154615054) | |
| 85-212, gnl|mm7|chr4 (154615208-154615054) | |
| 85-212, gnl|Mm7|chr4 (154615069-154615196) | |
| 85-212, gnl|monDom2|scaffold_196 (658204-658357) | |
| 85-212, gnl|monDom2|scaffold_196 (658203-658357) | |
| 85-212, gnl|oryCun1|scaffold_145100 (3609-3467) | |
| 85-212, gnl|oryCun1|scaffold_145100 (3610-3467) | |
| 85-212, gnl|panTro1|chr1 (1545101-1545254) | |
| 85-212, gnl|panTro1|chr1 (1545100-1545254) | |
| 85-212, gnl|rheMac2|chr1 (4722073-4722226) | |
| 85-212, gnl|rheMac2|chr1 (4722072-4722226) | |
| 85-212, gnl|rn3|chr5 (172471002-172470849) | |
| 85-212, gnl|rn3|chr5 (172471003-172470849) | |
| 85-212, gnl|tetNig1|chrUn_random (28238005-28237891) | |
| 85-212, gnl|tetNig1|chrUn_random (28238005-28237891) | |
| 85-212, gnl|xenTro1|scaffold_609 (475268-475106) | |
| 85-212, gnl|xenTro1|scaffold_609 (475269-475106) | |
| 326-549, gnl|bosTau2|chr16 (37673514-37673737) | |
| 326-549, gnl|Hg17|chr1 (1683059-1682836) | |
| 326-549, gnl|Mm7|chr4 (154618235-154618451) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (0.154178) | |
| ste (0.135208) |