Non-Coding RNA Search

Ss1.1-rptbr0134_l19.5

Sequence:


               
               GAAAGCTGTATCTTGCAGGCTTGACTTAACTTTTTTTCCTTAAAAATCTGGAATATAATC
TTATACCATTTACTGGAATAAACAGTACAAAGCATTTGAGTGTAAAACTTTCCAAATGTT
TTGGATTTACAGCGTTTCTTTGATAAATGAATTGCATACCACTAGTACAGCTCTAGTACA
GCATTGACAATAAGCTAATAATGGATAAACTTTTCTTTACTCCATTAACACAAGCAGTGT
TTTATTTAATAATCATCAATGAAATAAATGTGCCTGAAGTTGATTTTAAAAATTACAGTA
TTAGATCATAAAATAAAAACCAGCAGTACGTTTTTAGTCACACTGAAAATGAAGGACTTA
ATTTTCCCCACAAGTTTCAGTGGTTTTTAGTAATCAATTCTATGCATTTTATATAAATAG
AAATATATATATTACACATAAAAGGAGTAGCCTAAGATTAATTTAAAAGGTTATTTACAG
ATCGTAAGCTTATGGAGTCATTATGTAAGGGAATTGCTGCCCTCCACAGCCTCCAAAAAA
CACAATTTTGTTTATCTGGTCCAGCAGATTCCTGGTATCTGCTCACTTGGTGGAAAAGAA
TCAGTGCTGGCAGTGGATGTTTCAGAAACACCAAATGCAAAGGATTGATTGATGTTTGTA
CCAGATACAAAACTGGCGCGCGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGCTGTATCTTGCAGGCTTGACTTAACTTTTTTTCCTTAAAAATCTGGAATATAATC
TTATACCATTTACTGGAATAAACAGTACAAAGCATTTGAGTGTAAAACTTTCCAAATGTT
TTGGATTTACAGCGTTTCTTTGATAAATGAATTGCATACCACTAGTACAGCTCTAGTACA
GCATTGACAATAAGCTAATAATGGATAAACTTTTCTTTACTCCATTAACACAAGCAGTGT
TTTATTTAATAATCATCAATGAAATAAATGTGCCTGAAGTTGATTTTAAAAATTACAGTA
TTAGATCATAAAATAAAAACCAGCAGTACGTTTTTAGTCACACTGAAAATGAAGGACTTA
ATTTTCCCCACAAGTTTCAGTGGTTTTTAGTAATCAATTCTATGCATTTTATATAAATAG
AAATATATATATTACACATAAAAGGAGTAGCCTAAGATTAATTTAAAAGGTTATTTACAG
ATCGTAAGCTTATGGAGTCATTATGTAAGGGAATTGCTGCCCTCCACAGCCTCCAAAAAA
CACAATTTTGTTTATCTGGTCCAGCAGATTCCTGGTATCTGCTCACTTGGTGGAAAAGAA
TCAGTGCTGGCAGTGGATGTTTCAGAAACACCAAATGCAAAGGATTGATTGATGTTTGTA
CCAGATACAAAACTGGCGCGCGGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               39-158, + strand, RNAz p=0.821122

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-158, + strand, RNAz p=0.821122

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-677, gnl|bosTau2|chr15 (38274157-38273488)
               

               
               1-677, gnl|Hg17|chr11 (33333538-33334213)
               

               
               1-677, gnl|Mm7|chr2 (104278786-104278153)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-677, gnl|bosTau2|chr15 (38274157-38273488)
               

               
               1-677, gnl|Hg17|chr11 (33333538-33334213)
               

               
               1-677, gnl|Mm7|chr2 (104278786-104278153)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               hea (0.204499)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               ldo (0.0970026)

	1-677, gnl\|bosTau2\|chr15 (38274157-38273488)
	1-677, gnl\|Hg17\|chr11 (33333538-33334213)
	1-677, gnl\|Mm7\|chr2 (104278786-104278153)