Non-Coding RNA Search

Ss1.1-rptbr0137_b12.5

Sequence:


               
               ATTCGAATATCAGCCCTGCTATTTCCATCCATGAGATTGGTGCTGTTGGAGCAACCAAAA
CAGAACGAACTGGGATCATGAAGTTAAAAAGTGAGATAAAGCAGTCACCTGGTACCTCTA
TGACTCCAAGTAGTGGCTCCTTCCCTAGTGCATATGGTCAACAGACATCTAAAGATAGTC
GTCAGGGTCAGTGGCAACGCCGAAGAAGGCTGGATGGAGCACTGAACAGAGTCCCAGTTG
GATTTTATCAAAAAGTATGGAAAGTTTTGCAGAAGTGTCATGGACTTTCTGTGGAAGGTT
TTGTTCTTCCTTCTTCAACCACTAGAGAGATGACTCCAGGCGAGATTAAATTCTCTGTTC
ATGTGGAGTCTGTCCTGAATCGCGTACCTCAGCCAGAGTACCGCCAGCTTCTGGTTGAAG
CCATCCTTGTCCTCACCATGATGGCAGACATTGAAATTCATAGTATTGGAAGCATCATTG
CTGTGGAAAAGATAGTGCATATTGCCAATGACTTGTTCCTTCAAGAACAGAAAACCCTCG
GTGCAGATGATATCATGTTGGCAAAGGATCCTGCGTCTGGCATCTGTACGCTTCTGTATG
ACAGTGCACCCAGTGGCAGGTTTGGCACCATGACCTACCTCTCCAAGGCAGCCGCCACCT
ACGTGCAGGAGTTCCTGCCCCACAGCATCTGTGCCATGCAGTGAGGCCTCGAGGCCCTGC
GTGCTGGGAGCCTTTTGACAGCTGGTTCCTGCCTCGTTGATTGTGCATGGAACTCAAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCGAATATCAGCCCTGCTATTTCCATCCATGAGATTGGTGCTGTTGGAGCAACCAAAA
CAGAACGAACTGGGATCATGAAGTTAAAAAGTGAGATAAAGCAGTCACCTGGTACCTCTA
TGACTCCAAGTAGTGGCTCCTTCCCTAGTGCATATGGTCAACAGACATCTAAAGATAGTC
GTCAGGGTCAGTGGCAACGCCGAAGAAGGCTGGATGGAGCACTGAACAGAGTCCCAGTTG
GATTTTATCAAAAAGTATGGAAAGTTTTGCAGAAGTGTCATGGACTTTCTGTGGAAGGTT
TTGTTCTTCCTTCTTCAACCACTAGAGAGATGACTCCAGGCGAGATTAAATTCTCTGTTC
ATGTGGAGTCTGTCCTGAATCGCGTACCTCAGCCAGAGTACCGCCAGCTTCTGGTTGAAG
CCATCCTTGTCCTCACCATGATGGCAGACATTGAAATTCATAGTATTGGAAGCATCATTG
CTGTGGAAAAGATAGTGCATATTGCCAATGACTTGTTCCTTCAAGAACAGAAAACCCTCG
GTGCAGATGATATCATGTTGGCAAAGGATCCTGCGTCTGGCATCTGTACGCTTCTGTATG
ACAGTGCACCCAGTGGCAGGTTTGGCACCATGACCTACCTCTCCAAGGCAGCCGCCACCT
ACGTGCAGGAGTTCCTGCCCCACAGCATCTGTGCCATGCAGTGAGGCCTCGAGGCCCTGC
GTGCTGGGAGCCTTTTGACAGCTGGTTCCTGCCTCGTTGATTGTGCATGGAACTCAAATG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|34528883|dbj|BAC85594.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|34528883|dbj|BAC85594.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               606-779, - strand, RNAz p=0.689477

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               606-779, - strand, RNAz p=0.689477

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               103-275, gnl|bosTau2|chrX (24080171-24079999)
               

               
               103-275, gnl|Hg17|chrX (71596147-71595975)
               

               
               103-275, gnl|Mm7|chrX (97848285-97848113)
               


               
               526-779, gnl|bosTau2|chrX (24074727-24074475)
               

               
               526-779, gnl|Hg17|chrX (71584051-71583797)
               

               
               526-779, gnl|Mm7|chrX (97843579-97843329)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-275, gnl|bosTau2|chrX (24080171-24079999)
               

               
               103-275, gnl|Hg17|chrX (71596147-71595975)
               

               
               103-275, gnl|Mm7|chrX (97848285-97848113)
               


               
               526-779, gnl|bosTau2|chrX (24074727-24074475)
               

               
               526-779, gnl|Hg17|chrX (71584051-71583797)
               

               
               526-779, gnl|Mm7|chrX (97843579-97843329)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               tbr (0.154178)
               

               
               ste (0.135208)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)
               

               
               ste (0.135208)
               

               
               pla (0.133672)

	103-275, gnl\|bosTau2\|chrX (24080171-24079999)
	103-275, gnl\|Hg17\|chrX (71596147-71595975)
	103-275, gnl\|Mm7\|chrX (97848285-97848113)

	526-779, gnl\|bosTau2\|chrX (24074727-24074475)
	526-779, gnl\|Hg17\|chrX (71584051-71583797)
	526-779, gnl\|Mm7\|chrX (97843579-97843329)