Non-Coding RNA Search

Ss1.1-rptbr0137_h10.5

Sequence:


               
               GGTGAATGCGGCAAATGCTTCAGCCAGAGCTCTCATCTTAGGCAGCACATGAAGGTGCAC
AAAGAAGAGAAGCCACGTAAAACCCGGGGCAAAAATATTAGGGCGAAAGCTCACTTAGTA
TCATCTTGGAAAGCTGGTAAAGGAAGGAAGTCAGTGGCTCGTCTCCGCTAAGTAAAAAGG
GCACTGCATCAACCCTCTTTTAAAAAAAATAAGAAGCATTTCTTTTAGAACTGGAGTATT
TTATAATAGTGCACTTAAATACTATATCCTTTCCTAGCATGGGGACATTGGGGGGTTTAA
TGACATTGGGCTGAGAGAAATTACATTGCCTTCCTCATTTTTTATATAACCTGGAATACA
GAAAAACTGAAACTGTTTTGGGAGAATATAAGCTCCTTTATCTCATTTGAAATCACTTCC
TGCATCATTTTGACAAAAACAGTGATGTTTTGGTAACACATGTAAAAGTGTAGGAATTCC
AATGACTACTCAGTTCTAGGACTTTCCATGGAAAGAATAATTAAAAGGGAGAAGAAATTC
CATTAGTTTTGGAGTTCTGCAGTAGATGAGATTTTGTTTGTCAAGTTTTGTAGCATATTA
ACCATTGGCTTGTAAGTATGACTCAAGATTCAACATATTAAAATGAATTCATGTTCACAA
ATCTTTAATCAACAAGGTCCGTTACTCTGTTAGCTTGCTTTTGTTTCTTCTGCTTATGGA
GAGCTGTTAGAGGAGCAGAATGTCTCTGTTTTTCACTAAATTCTTAGTAAGAGATACTCT
AGAAGCCAAAAGGAATTGAATTAGACCACAAGATTCCTAATACTCCTCTTTGTGATGGTA
TTACACTGTCACTTGTTTTCCAGAAGCTGGAATGGATTTTTTGTTAGTCCATCCCCATGC
CTTTAACTTCTTTTGGCATTCTCTTGTGCTTTGACAGACTGATCTAGCCTTTTATATCTA
CAGGAATAAATAATTAAACCAAAATTATTTTTCCAAAACCACCTCAACATGCAAATTAAA
AATCTACAATTTACATGCCTCCTTGCCTTCCCCTTTGAGAGCTTCAGATAGGCTTAATTA
TCTTAAATGTTTGCCAGTGACAAAAATGAAGTTTTTGAAGTGTCAATGCATTGAAATCTA
AGTTTAACTTTTTCAGAGTTGTATCAATTATTTACAAAACCAAGCAAACAAGTTTCTTTC
ATCAGAACAGTGCCAAGTATCAAACATTCTGATTAGCCTTCAGCTCATGTTTTAATTTCT
ATTGAATGCTAACATTCTTCTGATTTTTTTTATATCTTTTATAATCATATCAATTCTTGC
TGTATTAATGACAGTTATCCATAAAAATAAAAAAAGATTATTTTGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGAATGCGGCAAATGCTTCAGCCAGAGCTCTCATCTTAGGCAGCACATGAAGGTGCAC
AAAGAAGAGAAGCCACGTAAAACCCGGGGCAAAAATATTAGGGCGAAAGCTCACTTAGTA
TCATCTTGGAAAGCTGGTAAAGGAAGGAAGTCAGTGGCTCGTCTCCGCTAAGTAAAAAGG
GCACTGCATCAACCCTCTTTTAAAAAAAATAAGAAGCATTTCTTTTAGAACTGGAGTATT
TTATAATAGTGCACTTAAATACTATATCCTTTCCTAGCATGGGGACATTGGGGGGTTTAA
TGACATTGGGCTGAGAGAAATTACATTGCCTTCCTCATTTTTTATATAACCTGGAATACA
GAAAAACTGAAACTGTTTTGGGAGAATATAAGCTCCTTTATCTCATTTGAAATCACTTCC
TGCATCATTTTGACAAAAACAGTGATGTTTTGGTAACACATGTAAAAGTGTAGGAATTCC
AATGACTACTCAGTTCTAGGACTTTCCATGGAAAGAATAATTAAAAGGGAGAAGAAATTC
CATTAGTTTTGGAGTTCTGCAGTAGATGAGATTTTGTTTGTCAAGTTTTGTAGCATATTA
ACCATTGGCTTGTAAGTATGACTCAAGATTCAACATATTAAAATGAATTCATGTTCACAA
ATCTTTAATCAACAAGGTCCGTTACTCTGTTAGCTTGCTTTTGTTTCTTCTGCTTATGGA
GAGCTGTTAGAGGAGCAGAATGTCTCTGTTTTTCACTAAATTCTTAGTAAGAGATACTCT
AGAAGCCAAAAGGAATTGAATTAGACCACAAGATTCCTAATACTCCTCTTTGTGATGGTA
TTACACTGTCACTTGTTTTCCAGAAGCTGGAATGGATTTTTTGTTAGTCCATCCCCATGC
CTTTAACTTCTTTTGGCATTCTCTTGTGCTTTGACAGACTGATCTAGCCTTTTATATCTA
CAGGAATAAATAATTAAACCAAAATTATTTTTCCAAAACCACCTCAACATGCAAATTAAA
AATCTACAATTTACATGCCTCCTTGCCTTCCCCTTTGAGAGCTTCAGATAGGCTTAATTA
TCTTAAATGTTTGCCAGTGACAAAAATGAAGTTTTTGAAGTGTCAATGCATTGAAATCTA
AGTTTAACTTTTTCAGAGTTGTATCAATTATTTACAAAACCAAGCAAACAAGTTTCTTTC
ATCAGAACAGTGCCAAGTATCAAACATTCTGATTAGCCTTCAGCTCATGTTTTAATTTCT
ATTGAATGCTAACATTCTTCTGATTTTTTTTATATCTTTTATAATCATATCAATTCTTGC
TGTATTAATGACAGTTATCCATAAAAATAAAAAAAGATTATTTTGCAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|340430|gb|AAA36815.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|340430|gb|AAA36815.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-1366, gnl|bosTau2|chr28 (33210584-33211979)
               

               
               2-1366, gnl|Hg17|chr10 (44819410-44820774)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1366, gnl|bosTau2|chr28 (33210584-33211979)
               

               
               2-1366, gnl|Hg17|chr10 (44819410-44820774)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               liv (0.438853)
               

               
               lin (0.436808)
               

               
               ret (0.3862)
               

               
               fco (0.314416)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               thg (0.253582)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.438853)
               

               
               lin (0.436808)
               

               
               ret (0.3862)
               

               
               fco (0.314416)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               thg (0.253582)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	2-1366, gnl\|bosTau2\|chr28 (33210584-33211979)
	2-1366, gnl\|Hg17\|chr10 (44819410-44820774)

	liv (0.438853)
	lin (0.436808)
	ret (0.3862)
	fco (0.314416)
	fce (0.271592)
	kid (0.259471)
	thg (0.253582)
	sag (0.182715)
	gul (0.177588)
	fbs (0.175346)
	rec (0.17307)
	eye (0.170503)
	mga (0.160205)
	tbr (0.154178)
	tra (0.123092)
	ebs (0.118301)
	eje (0.0988338)
	ldo (0.0970026)