Non-Coding RNA Search

Ss1.1-rptbr0137_h19.5

Sequence:


               
               CTTCCTCCACCCCCACCTCCTCCACCTCCTCCAGGGCCACCTCCACTTTTTGAGAGTGAG
GGCAGAAGAGAGGAACCCTCTCCTTCACGCTCAGCTTTATTTGCACAACTTAACCAAGGG
GAAGCAATTACAAGAGGGCTCCGGCATGTTACAGATGACCAGAAGACGTACAAGAATCCC
AGCCTACGGGCTCCGGGAGGACAAACTCCCTCTCCTACCAAAAGCCACTCTCCAGGCCCC
AAGTCTCCTCACTCTCATCCTCCTAAGAAACATGCTCCTATGTTAGAGCTGGAAGGAAAG
AAATGGAGAATAGAGTACCAAGAGGACAGGAATGACCTTGTGATTTCAGAGACCGAACTA
AGACAAGTGGCCTACATTTTCAAATGCAACAAGTCTACTCTACAGATAAAAGGGAAAATA
AATTCCATTATAGTTGACAATTGTAAGAAGTTTGGCCTGGTGTTTGACAATGCGGTGGGC
ATCGTGGAAGTGATCAACTCCAAGGACATTCAGATGCAGGTAATGGGGAAAGTGCCAACA
ATTTCCATTAATAAGACAGAAGGCTGCCACATATACCTCAGTGAAGACGCATTAGACTGT
GACATTGTGAGTGCCAAGTCATCTGAAATGAATATACTTATCCCTCGGGATGGCGATTAT
AGAGAATTTCCTGTTCCTGAACAGTTCAAGACAGCATGGGATGGATCCAAGTTGGTCACT
GAACCTACAGAAATTATGGTTTCTGAGAGACCACCGAAGCCCCTGAACTGAATCATCCCC
ATCAAACAAACAAACAAACAAACAAACAAGCAAAAACAGCAGCATTAAAGACCTAGAAGT
TGCAGTAGCACCTACTGCTTTAGTTTTAGCCTCCAACAATCCTTTGTTATAGAAACAGCA
TCATTTCTGGCACGCCTTCATGGGCATTTTGAAATATTTAACGTTTCTTCATGATTTGCC
TTTGTGTGTGGTTTGAGTTCCACATGATGACTTGTGAGCATTATGTATTTAAAGGGAAAA
AAAATTCTGTTCCCCTCATATCATTATCACAGTAGCTGAGAGGTAAAAATATTGCATGAC
TCACTTTTACACCTATATTTAATTGCTAGTTGAAAATCTAAGATGTACATTTTTATCTTT
TAGACAGTGTCCATATATGTAGTGGTATTTAGTATGCTCTAAAAAAATGTACGATTTTTG
TTTTCTTATTTTTACCACCTTTATCAGCATGACTACACTGTCAACCTGAATGCATATTTC
AACCCATGTTTTTAAAAAACCTAAGCTCCATACTGAGGACCATATCCAGGTTCTTGATCC
TTGAAAGACCTGTTTTCTCTACAGTTACCAAACACCAAAAGTAAATTCTAATGATTGATT
TTAAACATTTTTCTGCCGTGTCACTTGACAAACTTTCACTTTTCTGCATAAAGATTTTTG
ATGCCAAAAGATTGATGGGAGGAAGTGGCGGGGTGCATCGAATACCTCACAATTTTGCTC
TAAGGACAAAATTGTTGTCTTCCAATTTCGAACCTGTTAAATATCAGCTGCCTTGTAAGT
GATGTCTTCAATGTTTTATTCTGACTTTCTTTTCTACTTGCCAGATTTGCTAGCCAGTCT
CAAAAATGAAAATGAAAAAGCCATAGTTATATTACAACTTATATAACCCAAGGAACTGTT
TGTTGGTTTGGCTTGCTGCTTCTATTTTGTAGTATTGATAGTACGTGCTTTTTCAACATG
AATAACTCTGATACTCCTTTTTATCTTTTCAGTGCATAGTACTGAAAAATCTGCAACTTC
TTGGATCACATGTAATGAGTTCTAGTTTAATGCTTGCAGACCCAATACAAGCATATATAT
TGTGCCTATTACAACCTTTGGAATACATCATTTCCGTTTTTTAAATATCTTCTATAACCG
TATAGTATTCAAATTTCAAATGCTCCGGCCGTGTACTACAGTTTTGCTATGAAAGTTTTT
GTCCATATGAATAATGTTGTAGCTTTAGTAAATATCTTTTTTTCAGCTGTAAACTTACTC
TGAAATAAAGGAAAATTCTAATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCCTCCACCCCCACCTCCTCCACCTCCTCCAGGGCCACCTCCACTTTTTGAGAGTGAG
GGCAGAAGAGAGGAACCCTCTCCTTCACGCTCAGCTTTATTTGCACAACTTAACCAAGGG
GAAGCAATTACAAGAGGGCTCCGGCATGTTACAGATGACCAGAAGACGTACAAGAATCCC
AGCCTACGGGCTCCGGGAGGACAAACTCCCTCTCCTACCAAAAGCCACTCTCCAGGCCCC
AAGTCTCCTCACTCTCATCCTCCTAAGAAACATGCTCCTATGTTAGAGCTGGAAGGAAAG
AAATGGAGAATAGAGTACCAAGAGGACAGGAATGACCTTGTGATTTCAGAGACCGAACTA
AGACAAGTGGCCTACATTTTCAAATGCAACAAGTCTACTCTACAGATAAAAGGGAAAATA
AATTCCATTATAGTTGACAATTGTAAGAAGTTTGGCCTGGTGTTTGACAATGCGGTGGGC
ATCGTGGAAGTGATCAACTCCAAGGACATTCAGATGCAGGTAATGGGGAAAGTGCCAACA
ATTTCCATTAATAAGACAGAAGGCTGCCACATATACCTCAGTGAAGACGCATTAGACTGT
GACATTGTGAGTGCCAAGTCATCTGAAATGAATATACTTATCCCTCGGGATGGCGATTAT
AGAGAATTTCCTGTTCCTGAACAGTTCAAGACAGCATGGGATGGATCCAAGTTGGTCACT
GAACCTACAGAAATTATGGTTTCTGAGAGACCACCGAAGCCCCTGAACTGAATCATCCCC
ATCAAACAAACAAACAAACAAACAAACAAGCAAAAACAGCAGCATTAAAGACCTAGAAGT
TGCAGTAGCACCTACTGCTTTAGTTTTAGCCTCCAACAATCCTTTGTTATAGAAACAGCA
TCATTTCTGGCACGCCTTCATGGGCATTTTGAAATATTTAACGTTTCTTCATGATTTGCC
TTTGTGTGTGGTTTGAGTTCCACATGATGACTTGTGAGCATTATGTATTTAAAGGGAAAA
AAAATTCTGTTCCCCTCATATCATTATCACAGTAGCTGAGAGGTAAAAATATTGCATGAC
TCACTTTTACACCTATATTTAATTGCTAGTTGAAAATCTAAGATGTACATTTTTATCTTT
TAGACAGTGTCCATATATGTAGTGGTATTTAGTATGCTCTAAAAAAATGTACGATTTTTG
TTTTCTTATTTTTACCACCTTTATCAGCATGACTACACTGTCAACCTGAATGCATATTTC
AACCCATGTTTTTAAAAAACCTAAGCTCCATACTGAGGACCATATCCAGGTTCTTGATCC
TTGAAAGACCTGTTTTCTCTACAGTTACCAAACACCAAAAGTAAATTCTAATGATTGATT
TTAAACATTTTTCTGCCGTGTCACTTGACAAACTTTCACTTTTCTGCATAAAGATTTTTG
ATGCCAAAAGATTGATGGGAGGAAGTGGCGGGGTGCATCGAATACCTCACAATTTTGCTC
TAAGGACAAAATTGTTGTCTTCCAATTTCGAACCTGTTAAATATCAGCTGCCTTGTAAGT
GATGTCTTCAATGTTTTATTCTGACTTTCTTTTCTACTTGCCAGATTTGCTAGCCAGTCT
CAAAAATGAAAATGAAAAAGCCATAGTTATATTACAACTTATATAACCCAAGGAACTGTT
TGTTGGTTTGGCTTGCTGCTTCTATTTTGTAGTATTGATAGTACGTGCTTTTTCAACATG
AATAACTCTGATACTCCTTTTTATCTTTTCAGTGCATAGTACTGAAAAATCTGCAACTTC
TTGGATCACATGTAATGAGTTCTAGTTTAATGCTTGCAGACCCAATACAAGCATATATAT
TGTGCCTATTACAACCTTTGGAATACATCATTTCCGTTTTTTAAATATCTTCTATAACCG
TATAGTATTCAAATTTCAAATGCTCCGGCCGTGTACTACAGTTTTGCTATGAAAGTTTTT
GTCCATATGAATAATGTTGTAGCTTTAGTAAATATCTTTTTTTCAGCTGTAAACTTACTC
TGAAATAAAGGAAAATTCTAATTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|13874486|dbj|BAB46867.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13874486|dbj|BAB46867.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               78-735, gnl|bosTau2|chr12 (5945392-5944735)
               

               
               78-735, gnl|Hg17|chr3 (76566591-76567260)
               

               
               78-735, gnl|Mm7|chr4 (122309285-122304789)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               78-735, gnl|bosTau2|chr12 (5945392-5944735)
               

               
               78-735, gnl|Hg17|chr3 (76566591-76567260)
               

               
               78-735, gnl|Mm7|chr4 (122309285-122304789)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

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               bfe (1.79829)
               

               
               fco (1.10046)
               

               
               ste (1.08167)
               

               
               tbr (0.925069)
               

               
               ldo (0.873024)
               

               
               vin (0.665115)
               

               
               sme (0.610874)
               

               
               ret (0.3862)
               

               
               isp (0.300752)
               

               
               hlv (0.278513)
               

               
               tra (0.246184)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (1.79829)
               

               
               fco (1.10046)
               

               
               ste (1.08167)
               

               
               tbr (0.925069)
               

               
               ldo (0.873024)
               

               
               vin (0.665115)
               

               
               sme (0.610874)
               

               
               ret (0.3862)
               

               
               isp (0.300752)
               

               
               hlv (0.278513)
               

               
               tra (0.246184)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)

	78-735, gnl\|bosTau2\|chr12 (5945392-5944735)
	78-735, gnl\|Hg17\|chr3 (76566591-76567260)
	78-735, gnl\|Mm7\|chr4 (122309285-122304789)

	bfe (1.79829)
	fco (1.10046)
	ste (1.08167)
	tbr (0.925069)
	ldo (0.873024)
	vin (0.665115)
	sme (0.610874)
	ret (0.3862)
	isp (0.300752)
	hlv (0.278513)
	tra (0.246184)
	fcc (0.197785)
	eye (0.170503)
	liv (0.146284)
	lin (0.145603)
	hyp (0.142837)
	ssp (0.13552)
	bla (0.124347)
	ebs (0.118301)