Non-Coding RNA Search

Ss1.1-rptbr0137_i7.5

Sequence:


               
               GGGCTATTTTTAGTGCGTTGAAGGTAAAGTTACAATCAAATTAAGAGAGACAGAATAGGT
AGCAACTGCCAGGCCTGACAGGCAAAGTCTGCTTTTCCTTTTTACGGCACCTGTGAATGG
TCAGACCCTTGTCCCTGAAACCCTGACCTACCCATAACTCCATGCTAGGCTGAGTGAAAA
TCCTGCTCTGTTTCTACCTGCCTAAAGCTTCCCCAATGGGACTTGGAGCGTGTCCTGCAA
CACTGTCTCCAGATAGTTCTTCTTAGAAACCACAGACTTGTTTTGTAACCTTTTCTCATG
TTGAATCAGATCTGCTCACTGATTGGAACATTGGTTATGAACTTGTATCTCACTGTATTT
CTTATGCTTTGTTCTTTTAAGCAAACCTTTAAAATTGTGTTGTTTTGTGTACACAAATGT
GAGGTTTGGGAAAAAAAGAAAAAAAAACCTTGTGGTTTTTGCTCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCTATTTTTAGTGCGTTGAAGGTAAAGTTACAATCAAATTAAGAGAGACAGAATAGGT
AGCAACTGCCAGGCCTGACAGGCAAAGTCTGCTTTTCCTTTTTACGGCACCTGTGAATGG
TCAGACCCTTGTCCCTGAAACCCTGACCTACCCATAACTCCATGCTAGGCTGAGTGAAAA
TCCTGCTCTGTTTCTACCTGCCTAAAGCTTCCCCAATGGGACTTGGAGCGTGTCCTGCAA
CACTGTCTCCAGATAGTTCTTCTTAGAAACCACAGACTTGTTTTGTAACCTTTTCTCATG
TTGAATCAGATCTGCTCACTGATTGGAACATTGGTTATGAACTTGTATCTCACTGTATTT
CTTATGCTTTGTTCTTTTAAGCAAACCTTTAAAATTGTGTTGTTTTGTGTACACAAATGT
GAGGTTTGGGAAAAAAAGAAAAAAAAACCTTGTGGTTTTTGCTCAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               308-468, - strand, RNAz p=0.996657

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               308-468, - strand, RNAz p=0.996657

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               23-468, gnl|bosTau2|chr9 (43902402-43901967)
               

               
               23-468, gnl|canFam2|chr1 (31833771-31834281)
               

               
               23-468, gnl|dasNov1|scaffold_25224 (6749-6295)
               

               
               23-468, gnl|echTel1|scaffold_300935 (7374-7850)
               

               
               23-468, gnl|hg17|chr6 (136557783-136558263)
               

               
               23-468, gnl|Hg17|chr6 (136557863-136558335)
               

               
               23-468, gnl|mm7|chr10 (20122451-20121850)
               

               
               23-468, gnl|Mm7|chr10 (20122301-20121787)
               

               
               23-468, gnl|monDom2|scaffold_0 (74054996-74054623)
               

               
               23-468, gnl|oryCun1|scaffold_210082 (50809-50326)
               

               
               23-468, gnl|panTro1|chr5 (139364043-139364523)
               

               
               23-468, gnl|rheMac2|chr4 (127646254-127645772)
               

               
               23-468, gnl|rn3|chr1 (15698805-15698331)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-468, gnl|bosTau2|chr9 (43902402-43901967)
               

               
               23-468, gnl|canFam2|chr1 (31833771-31834281)
               

               
               23-468, gnl|dasNov1|scaffold_25224 (6749-6295)
               

               
               23-468, gnl|echTel1|scaffold_300935 (7374-7850)
               

               
               23-468, gnl|hg17|chr6 (136557783-136558263)
               

               
               23-468, gnl|Hg17|chr6 (136557863-136558335)
               

               
               23-468, gnl|mm7|chr10 (20122451-20121850)
               

               
               23-468, gnl|Mm7|chr10 (20122301-20121787)
               

               
               23-468, gnl|monDom2|scaffold_0 (74054996-74054623)
               

               
               23-468, gnl|oryCun1|scaffold_210082 (50809-50326)
               

               
               23-468, gnl|panTro1|chr5 (139364043-139364523)
               

               
               23-468, gnl|rheMac2|chr4 (127646254-127645772)
               

               
               23-468, gnl|rn3|chr1 (15698805-15698331)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               gul (0.177588)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               sug (0.127291)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               sug (0.127291)

	23-468, gnl\|bosTau2\|chr9 (43902402-43901967)
	23-468, gnl\|canFam2\|chr1 (31833771-31834281)
	23-468, gnl\|dasNov1\|scaffold_25224 (6749-6295)
	23-468, gnl\|echTel1\|scaffold_300935 (7374-7850)
	23-468, gnl\|hg17\|chr6 (136557783-136558263)
	23-468, gnl\|Hg17\|chr6 (136557863-136558335)
	23-468, gnl\|mm7\|chr10 (20122451-20121850)
	23-468, gnl\|Mm7\|chr10 (20122301-20121787)
	23-468, gnl\|monDom2\|scaffold_0 (74054996-74054623)
	23-468, gnl\|oryCun1\|scaffold_210082 (50809-50326)
	23-468, gnl\|panTro1\|chr5 (139364043-139364523)
	23-468, gnl\|rheMac2\|chr4 (127646254-127645772)
	23-468, gnl\|rn3\|chr1 (15698805-15698331)

	gul (0.177588)
	nje (0.16592)
	tbr (0.154178)
	ski (0.146735)
	sug (0.127291)