Non-Coding RNA Search

Ss1.1-rptbr0137_p11.5

Sequence:


               
               TTTCAAAGTTCC------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------CAGATAAAGCTGAAATCTTACTCT
CATTCCAGCCCCTCTAAATTTAAAAAATTTAATAATTTCAGTATTGTATGTTCTATGTAG
TTCCTTATGAAAACATTGTATTATTCTGCAACTTGCTTTTTTCCTTCATCCTCCAGTAAG
ATCCATCTGTGATGTCACATTCCTTTTACCAGCTATCGGATGTTCTGTTTTATCTCTTCC
TCTGCTGACAGATGTTTAGGTTGTTTCCAATTTCTCAGAATTACAGATAAGGCTGCAATA
TCCATTCTTAATCATGTCTCCTTGGGCACAAGTGTGTATATTTCTCCAGATGGATACTAA
GAGGTAGAACTTACTGGATCCTGGGTAAGCACGGCTTTTCTAGATGCTGCCAGATGATCC
TCCAAAGTGGTTGTAACAAATCATATTGCTGCTGTTTCTAGAAGTCCTTTATAAATTTAC
ACAGTCAAATGTATCACTCTTTCTTGATGGTTCTTTCCTTCCGTGTCATAAAAAGGAAAA
GAACCTCATGTTGGTCTTTTCTGCAGCTTCCTACCCATTTGTTAAGTTATTGTCTCCTGT
CTATAAATTAATTGTTTCTGCCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCAAAGTTCC------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------CAGATAAAGCTGAAATCTTACTCT
CATTCCAGCCCCTCTAAATTTAAAAAATTTAATAATTTCAGTATTGTATGTTCTATGTAG
TTCCTTATGAAAACATTGTATTATTCTGCAACTTGCTTTTTTCCTTCATCCTCCAGTAAG
ATCCATCTGTGATGTCACATTCCTTTTACCAGCTATCGGATGTTCTGTTTTATCTCTTCC
TCTGCTGACAGATGTTTAGGTTGTTTCCAATTTCTCAGAATTACAGATAAGGCTGCAATA
TCCATTCTTAATCATGTCTCCTTGGGCACAAGTGTGTATATTTCTCCAGATGGATACTAA
GAGGTAGAACTTACTGGATCCTGGGTAAGCACGGCTTTTCTAGATGCTGCCAGATGATCC
TCCAAAGTGGTTGTAACAAATCATATTGCTGCTGTTTCTAGAAGTCCTTTATAAATTTAC
ACAGTCAAATGTATCACTCTTTCTTGATGGTTCTTTCCTTCCGTGTCATAAAAAGGAAAA
GAACCTCATGTTGGTCTTTTCTGCAGCTTCCTACCCATTTGTTAAGTTATTGTCTCCTGT
CTATAAATTAATTGTTTCTGCCTA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               17-299, gnl|bosTau2|chr7 (10860061-10859757)
               


               
               317-435, gnl|bosTau2|chr7 (10859758-10859639)
               


               
               455-600, gnl|bosTau2|chr7 (10859165-10859021)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-299, gnl|bosTau2|chr7 (10860061-10859757)
               


               
               317-435, gnl|bosTau2|chr7 (10859758-10859639)
               


               
               455-600, gnl|bosTau2|chr7 (10859165-10859021)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fhi (0.169578)
               

               
               tbr (0.154178)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               tbr (0.154178)

	17-299, gnl\|bosTau2\|chr7 (10860061-10859757)

	317-435, gnl\|bosTau2\|chr7 (10859758-10859639)

	455-600, gnl\|bosTau2\|chr7 (10859165-10859021)