Non-Coding RNA Search

Ss1.1-rptbr0139_k18.5

Sequence:


               
               CGCCTGCCAGTCCGGAAGCCACAGGAGGAGGAATTTAAGGACGAATACTGGCCATTGTCC
TTCTCAGACCTCCAAGCTGCGCCATGCTTGCTCTCCGAAGCGGCCTGGCTAGGGCCTTGT
CCCCGCGGACGCTGGCGCCTCAGGTATGTTCATCTTTTGCTACAGGCCCCAGACAATATG
ATAGAACATTCTATGAGTTTCGTACTTATTGCCTTAAACCTTCAAAGATGAATGAGTTTC
TGGAAGAGGTAAAGAAAAACATACATCTTCGGACAGCTCACTCTGAGTTGATTGGATTCT
GGACTGTAGAATTTGGAGGCAGAATGAATAAAGTGTTTCACATTTGGAAGTATGACAATT
TTGCTCATAGATCTCAGGTTCGGGGGGAAGCTGTGGCCAAAGATAAGGAATGGCAAGAAA
AATTTCTCATCCCAAATCTGGCTCATATTTATAAACAAGAGATTGAAATTACTTATCTGG
TGCCATGGTGCAAATTAGAAAAACCTCCTAAAGAAGGAGTCTATGAGTTGGTTATTTTTC
AGATGAAACCAGGAGGGCCAGCCCTGTGGGGTGATGCATTTAAAAGGGCAGTTAATGCCC
ATGTAGATCTAGGTTACTCAAAACTAGTTGGAGTTTTCCACACCGAATATGGAGCACTCA
ACAGAGTTCACGTTCTTTGGTGGCACGAGAGTGCAGACAGTCGTGCAGCCGGGAGACATC
AGTCTCACGAGGATCCCAGGGTCGTGGCAGCTGTTCGGGAAAGTGTCAATTACCTAGTGT
CTCAGCAAAATATGTTTCTGATTCCTACATCATATTCGCCATTGAAATAATTTTCCACTG
AAACACAAAGCATTTCATGAACAAGCAAAGTGTGTCTGCTAATGGTGCTTAAATTTTCCC
AAGAAAGTCTTAGTTTTATTTGGAGAAAGTAGTAAGTTAATTTGCTACATCTCTGCATTT
TTAATGCTACCTCTGCCTTCTGTCACTACCACCTCAGGATAGTTCTCTTCATTTTCCTTA
CAGCATTTTGGTGTCTATTATATATTAGAAATATATATATTTATATATACTTACAGGGAT
ATATAAGTATATTGCCACTACTTCATGATCTTGATTTTTCATTTTTTTCAGAATATCTTG
TTCTCTATTTTAACAACCCTTTGCTTGAAAGTATTTTCTTATATTCGTATGATGATTTAC
ATTTCTGTGCCAGACAATATTTTTAAATTATTTATATATGATGTCTATCTTTTGATCATG
TCTGTTTTAGGTGAGATTTAAAAAAAATAAAATTTGCCCAGTAAAATTTACTTCACAACA
TTAAATGGGATTCATCAGAATATTAGATCAAATGTATTTCTTTGCCTTGAGAAGGTACGG
TATCACTTGTATCATCTGAATTAATTATATTTTCACATTAATTATTAGTCACTCATTTGG
AAATAAAGTAACTAGGTCTGTGTTTTTTAAAAAAACTTCAGAAGACTTGTATTTGCTGAA
ATATGTGCATTTATAGTTCTGTTAATTTTTGTTCATTTTGGATAACTATTTAATGAAGAT
CCTTGGGACATTTATTTGTTTTAAAGAGATCTTTATATTTATGGAAATGCTTGCCCTAAT
AAAAGCCTACATATGCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCTGCCAGTCCGGAAGCCACAGGAGGAGGAATTTAAGGACGAATACTGGCCATTGTCC
TTCTCAGACCTCCAAGCTGCGCCATGCTTGCTCTCCGAAGCGGCCTGGCTAGGGCCTTGT
CCCCGCGGACGCTGGCGCCTCAGGTATGTTCATCTTTTGCTACAGGCCCCAGACAATATG
ATAGAACATTCTATGAGTTTCGTACTTATTGCCTTAAACCTTCAAAGATGAATGAGTTTC
TGGAAGAGGTAAAGAAAAACATACATCTTCGGACAGCTCACTCTGAGTTGATTGGATTCT
GGACTGTAGAATTTGGAGGCAGAATGAATAAAGTGTTTCACATTTGGAAGTATGACAATT
TTGCTCATAGATCTCAGGTTCGGGGGGAAGCTGTGGCCAAAGATAAGGAATGGCAAGAAA
AATTTCTCATCCCAAATCTGGCTCATATTTATAAACAAGAGATTGAAATTACTTATCTGG
TGCCATGGTGCAAATTAGAAAAACCTCCTAAAGAAGGAGTCTATGAGTTGGTTATTTTTC
AGATGAAACCAGGAGGGCCAGCCCTGTGGGGTGATGCATTTAAAAGGGCAGTTAATGCCC
ATGTAGATCTAGGTTACTCAAAACTAGTTGGAGTTTTCCACACCGAATATGGAGCACTCA
ACAGAGTTCACGTTCTTTGGTGGCACGAGAGTGCAGACAGTCGTGCAGCCGGGAGACATC
AGTCTCACGAGGATCCCAGGGTCGTGGCAGCTGTTCGGGAAAGTGTCAATTACCTAGTGT
CTCAGCAAAATATGTTTCTGATTCCTACATCATATTCGCCATTGAAATAATTTTCCACTG
AAACACAAAGCATTTCATGAACAAGCAAAGTGTGTCTGCTAATGGTGCTTAAATTTTCCC
AAGAAAGTCTTAGTTTTATTTGGAGAAAGTAGTAAGTTAATTTGCTACATCTCTGCATTT
TTAATGCTACCTCTGCCTTCTGTCACTACCACCTCAGGATAGTTCTCTTCATTTTCCTTA
CAGCATTTTGGTGTCTATTATATATTAGAAATATATATATTTATATATACTTACAGGGAT
ATATAAGTATATTGCCACTACTTCATGATCTTGATTTTTCATTTTTTTCAGAATATCTTG
TTCTCTATTTTAACAACCCTTTGCTTGAAAGTATTTTCTTATATTCGTATGATGATTTAC
ATTTCTGTGCCAGACAATATTTTTAAATTATTTATATATGATGTCTATCTTTTGATCATG
TCTGTTTTAGGTGAGATTTAAAAAAAATAAAATTTGCCCAGTAAAATTTACTTCACAACA
TTAAATGGGATTCATCAGAATATTAGATCAAATGTATTTCTTTGCCTTGAGAAGGTACGG
TATCACTTGTATCATCTGAATTAATTATATTTTCACATTAATTATTAGTCACTCATTTGG
AAATAAAGTAACTAGGTCTGTGTTTTTTAAAAAAACTTCAGAAGACTTGTATTTGCTGAA
ATATGTGCATTTATAGTTCTGTTAATTTTTGTTCATTTTGGATAACTATTTAATGAAGAT
CCTTGGGACATTTATTTGTTTTAAAGAGATCTTTATATTTATGGAAATGCTTGCCCTAAT
AAAAGCCTACATATGCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55729129|emb|CAH91301.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55729129|emb|CAH91301.1|

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               753-1057, gnl|bosTau2|chr8 (50632646-50632347)
               

               
               753-1057, gnl|Hg17|chr9 (104614832-104615138)
               

               
               753-1057, gnl|Mm7|chr4 (53035102-53035394)
               


               
               1227-1644, gnl|bosTau2|chr24 (39980727-39981138)
               

               
               1227-1644, gnl|Hg17|chr9 (104615295-104615670)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               753-1057, gnl|bosTau2|chr8 (50632646-50632347)
               

               
               753-1057, gnl|Hg17|chr9 (104614832-104615138)
               

               
               753-1057, gnl|Mm7|chr4 (53035102-53035394)
               


               
               1227-1644, gnl|bosTau2|chr24 (39980727-39981138)
               

               
               1227-1644, gnl|Hg17|chr9 (104615295-104615670)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

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               bfe (0.749288)
               

               
               cbl (0.573987)
               

               
               fco (0.471624)
               

               
               isp (0.451128)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               lun (0.300978)
               

               
               ssp (0.271039)
               

               
               nms (0.213858)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.749288)
               

               
               cbl (0.573987)
               

               
               fco (0.471624)
               

               
               isp (0.451128)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               lun (0.300978)
               

               
               ssp (0.271039)
               

               
               nms (0.213858)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	753-1057, gnl\|bosTau2\|chr8 (50632646-50632347)
	753-1057, gnl\|Hg17\|chr9 (104614832-104615138)
	753-1057, gnl\|Mm7\|chr4 (53035102-53035394)

	1227-1644, gnl\|bosTau2\|chr24 (39980727-39981138)
	1227-1644, gnl\|Hg17\|chr9 (104615295-104615670)

	bfe (0.749288)
	cbl (0.573987)
	fco (0.471624)
	isp (0.451128)
	vin (0.332557)
	tbr (0.308356)
	lun (0.300978)
	ssp (0.271039)
	nms (0.213858)
	aor (0.195274)
	gul (0.177588)
	liv (0.146284)
	hyp (0.142837)
	hlv (0.139256)
	che (0.136314)
	ste (0.135208)
	ute (0.132784)
	kid (0.129735)
	ret (0.128733)
	sug (0.127291)
	eru (0.120048)
	spc (0.113366)
	nbm (0.0993246)
	ldo (0.0970026)