Non-Coding RNA Search

Ss1.1-rpty603b_i2.5

Sequence:


               
               GCAAACTCTACTTCTTTGGCGTTTTTTTTAATGGACTGACCCTGGGCCTTCAGAGCAATA
ACCGTGATCAGATTAAGAACTGTGGGTTTTTTTATGGCCACAATGCGTTTTCAGTAGCCC
TGATTTTTGTAACCGCAATCCAGGGCCTCTCAGTGGCTTTTATTCTGAAGTTCTTGGATA
ACATGTCTCATGTCATGATGGCCCAGGTCACCACTGTCATCATCACAACAGTGTCTGTCC
TGGTCTTTGACTTCAGGCCCTCCCTGGAGTTTTTCTTAGAAGCCCCATCAGTTCTTCTCT
CCATATTTATTTATAACGCCAGCAAGCCTCAAGGTCTGGAATATGCACCCAGGCAAGAAA
GAATCCGAGATCTAAATTGCAGCCTTTGGGAGCGCTCCAGTGGGGATGGAGAAGAACTGG
AAAGACTTACCAAACCCAGTGATATTGAGTCAGATTAAGATACTTTCTAAGTGGTACCCA
AATAGTTGGCAGTTCTTACAAACCTTATTTGCACATTTTAAGCATGTATGATATTTATCT
TTGCATTTTGATAAACCAAGAACCTTTCTAAAGCGTAAAACTCTTTGCATATATCTGACC
ACTCCCTAAGTAATTCCAGCCAAAGTTTAGAGTACCCAAAGGCTAAAAAGTTCCAAGGAA
CTGACATAAGAGTAATAATGTAGAGACTGCATTAATGGCCCGGTAGGTCAACAGGTTATA
TTCGCAGATTATTTTCTTTGTTTCTCCAAGGTTCCAAAAAACTTGTAATAACCATGTGAG
CTGTACCCTATTAATATGCAAATGGATACCAGTTTGCCAGATATTCATAATTATGTAGTT
TGCTTGGCATGCCATAGTCTTCCCTTTTCTATCATCATAAATATTACCTAAGTTGTCCCT
TAAATTTTGACACCATGGAGATAGTCATTTTGCAGTTAAAAAGCAGTGTGACTCCTCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAACTCTACTTCTTTGGCGTTTTTTTTAATGGACTGACCCTGGGCCTTCAGAGCAATA
ACCGTGATCAGATTAAGAACTGTGGGTTTTTTTATGGCCACAATGCGTTTTCAGTAGCCC
TGATTTTTGTAACCGCAATCCAGGGCCTCTCAGTGGCTTTTATTCTGAAGTTCTTGGATA
ACATGTCTCATGTCATGATGGCCCAGGTCACCACTGTCATCATCACAACAGTGTCTGTCC
TGGTCTTTGACTTCAGGCCCTCCCTGGAGTTTTTCTTAGAAGCCCCATCAGTTCTTCTCT
CCATATTTATTTATAACGCCAGCAAGCCTCAAGGTCTGGAATATGCACCCAGGCAAGAAA
GAATCCGAGATCTAAATTGCAGCCTTTGGGAGCGCTCCAGTGGGGATGGAGAAGAACTGG
AAAGACTTACCAAACCCAGTGATATTGAGTCAGATTAAGATACTTTCTAAGTGGTACCCA
AATAGTTGGCAGTTCTTACAAACCTTATTTGCACATTTTAAGCATGTATGATATTTATCT
TTGCATTTTGATAAACCAAGAACCTTTCTAAAGCGTAAAACTCTTTGCATATATCTGACC
ACTCCCTAAGTAATTCCAGCCAAAGTTTAGAGTACCCAAAGGCTAAAAAGTTCCAAGGAA
CTGACATAAGAGTAATAATGTAGAGACTGCATTAATGGCCCGGTAGGTCAACAGGTTATA
TTCGCAGATTATTTTCTTTGTTTCTCCAAGGTTCCAAAAAACTTGTAATAACCATGTGAG
CTGTACCCTATTAATATGCAAATGGATACCAGTTTGCCAGATATTCATAATTATGTAGTT
TGCTTGGCATGCCATAGTCTTCCCTTTTCTATCATCATAAATATTACCTAAGTTGTCCCT
TAAATTTTGACACCATGGAGATAGTCATTTTGCAGTTAAAAAGCAGTGTGACTCCTCAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q69YY6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q69YY6_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               590-705, - strand, RNAz p=0.866917

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               590-705, - strand, RNAz p=0.866917

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               471-705, gnl|bosTau2|chr5 (13201943-13202177)
               

               
               471-705, gnl|Hg17|chr3 (113784275-113784508)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               471-705, gnl|bosTau2|chr5 (13201943-13202177)
               

               
               471-705, gnl|Hg17|chr3 (113784275-113784508)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               liv (0.146284)
               

               
               pty (0.142714)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               ecc (0.115035)

	471-705, gnl\|bosTau2\|chr5 (13201943-13202177)
	471-705, gnl\|Hg17\|chr3 (113784275-113784508)